Analysis of interatomic Contacts of Structural Units in PDB entry:
9VHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VHL entry

There are 8 chains in PDB entry 9VHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	LEU 307
B	MET 1	SER 456
C	PRO 60	LEU 454
D	ASN 62	ARG 545
E	GLU 38	ARG 545
F	MET 1	GLU 214
G	G 3	A 76
H	U 3	A 41

There are 85 helices in PDB entry 9VHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	62	Right-handed alpha
Helix 2	AA2	A	78	86	Right-handed alpha
Helix 3	AA3	A	100	104	Right-handed 310
Helix 4	AA4	A	105	116	Right-handed alpha
Helix 5	AA5	A	128	136	Right-handed alpha
Helix 6	AA6	A	155	164	Right-handed alpha
Helix 7	AA7	A	165	178	Right-handed alpha
Helix 8	AA8	A	198	200	Right-handed 310
Helix 9	AA9	A	201	214	Right-handed alpha
Helix 10	AB1	A	250	266	Right-handed alpha
Helix 11	AB2	A	270	288	Right-handed alpha
Helix 12	AB3	A	288	299	Right-handed alpha
Helix 13	AB4	A	300	306	Right-handed alpha
Helix 14	AB5	B	2	12	Right-handed alpha
Helix 15	AB6	B	13	22	Right-handed alpha
Helix 16	AB7	B	38	47	Right-handed alpha
Helix 17	AB8	B	98	119	Right-handed alpha
Helix 18	AB9	B	176	193	Right-handed alpha
Helix 19	AC1	B	204	208	Right-handed 310
Helix 20	AC2	B	225	230	Right-handed 310
Helix 21	AC3	B	238	253	Right-handed alpha
Helix 22	AC4	B	310	326	Right-handed alpha
Helix 23	AC5	B	358	377	Right-handed alpha
Helix 24	AC6	B	384	388	Right-handed 310
Helix 25	AC7	B	402	407	Right-handed alpha
Helix 26	AC8	B	408	417	Right-handed alpha
Helix 27	AC9	C	99	119	Right-handed alpha
Helix 28	AD1	C	176	193	Right-handed alpha
Helix 29	AD2	C	204	208	Right-handed 310
Helix 30	AD3	C	224	230	Right-handed 310
Helix 31	AD4	C	238	256	Right-handed alpha
Helix 32	AD5	C	310	326	Right-handed alpha
Helix 33	AD6	C	360	379	Right-handed alpha
Helix 34	AD7	C	384	388	Right-handed 310
Helix 35	AD8	C	402	407	Right-handed alpha
Helix 36	AD9	C	408	417	Right-handed alpha
Helix 37	AE1	C	431	435	Right-handed 310
Helix 38	AE2	C	436	438	Right-handed 310
Helix 39	AE3	D	97	119	Right-handed alpha
Helix 40	AE4	D	176	193	Right-handed alpha
Helix 41	AE5	D	204	208	Right-handed 310
Helix 42	AE6	D	226	230	Right-handed 310
Helix 43	AE7	D	238	253	Right-handed alpha
Helix 44	AE8	D	311	326	Right-handed alpha
Helix 45	AE9	D	355	357	Right-handed 310
Helix 46	AF1	D	358	379	Right-handed alpha
Helix 47	AF2	D	384	388	Right-handed 310
Helix 48	AF3	D	402	417	Right-handed alpha
Helix 49	AF4	D	428	433	Right-handed alpha
Helix 50	AF5	D	465	473	Right-handed alpha
Helix 51	AF6	D	487	499	Right-handed alpha
Helix 52	AF7	D	504	519	Right-handed alpha
Helix 53	AF8	D	522	545	Right-handed alpha
Helix 54	AF9	E	39	48	Right-handed alpha
Helix 55	AG1	E	99	118	Right-handed alpha
Helix 56	AG2	E	176	193	Right-handed alpha
Helix 57	AG3	E	204	209	Right-handed 310
Helix 58	AG4	E	224	230	Right-handed 310
Helix 59	AG5	E	238	254	Right-handed alpha
Helix 60	AG6	E	310	326	Right-handed alpha
Helix 61	AG7	E	355	357	Right-handed 310
Helix 62	AG8	E	358	379	Right-handed alpha
Helix 63	AG9	E	384	388	Right-handed 310
Helix 64	AH1	E	402	407	Right-handed alpha
Helix 65	AH2	E	408	411	Right-handed 310
Helix 66	AH3	E	412	417	Right-handed alpha
Helix 67	AH4	E	428	433	Right-handed alpha
Helix 68	AH5	E	434	435	Right-handed 310
Helix 69	AH6	E	436	438	Right-handed 310
Helix 70	AH7	E	465	470	Right-handed alpha
Helix 71	AH8	E	483	498	Right-handed alpha
Helix 72	AH9	E	504	519	Right-handed alpha
Helix 73	AI1	E	522	544	Right-handed alpha
Helix 74	AI2	F	10	15	Right-handed 310
Helix 75	AI3	F	22	26	Right-handed 310
Helix 76	AI4	F	27	40	Right-handed alpha
Helix 77	AI5	F	66	72	Right-handed 310
Helix 78	AI6	F	89	97	Right-handed alpha
Helix 79	AI7	F	102	106	Right-handed 310
Helix 80	AI8	F	113	116	Right-handed 310
Helix 81	AI9	F	133	147	Right-handed alpha
Helix 82	AJ1	F	152	176	Right-handed alpha
Helix 83	AJ2	F	177	180	Right-handed 310
Helix 84	AJ3	F	181	195	Right-handed alpha
Helix 85	AJ4	F	201	210	Right-handed alpha

There are 20 sheets in PDB entry 9VHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	35	first strand
Strand 2	A	41	47	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	91	95	anti-parallel
Strand 4	A	226	229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	239	241	anti-parallel
Strand 3	A	247	248	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	64	72	anti-parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	154	164	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	203	first strand
Strand 2	B	390	394	parallel
Strand 3	B	420	426	parallel
Strand 4	B	88	92	parallel
Strand 5	B	440	442	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	335	first strand
Strand 2	B	342	347	anti-parallel
Strand 3	B	350	353	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	83	first strand
Strand 2	C	64	74	anti-parallel
Strand 3	C	141	150	anti-parallel
Strand 4	C	155	164	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	203	first strand
Strand 2	C	390	394	parallel
Strand 3	C	421	426	parallel
Strand 4	C	88	92	parallel
Strand 5	C	440	442	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	335	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	350	353	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	64	72	anti-parallel
Strand 3	D	141	150	anti-parallel
Strand 4	D	157	164	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	203	first strand
Strand 2	D	390	394	parallel
Strand 3	D	421	425	parallel
Strand 4	D	88	92	parallel
Strand 5	D	440	442	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	337	first strand
Strand 2	D	340	347	anti-parallel
Strand 3	D	350	353	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	57	58	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	83	first strand
Strand 2	E	64	74	anti-parallel
Strand 3	E	147	150	anti-parallel
Strand 4	E	154	157	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	83	first strand
Strand 2	E	64	74	anti-parallel
Strand 3	E	141	144	anti-parallel
Strand 4	E	161	164	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	203	first strand
Strand 2	E	390	395	parallel
Strand 3	E	420	426	parallel
Strand 4	E	88	92	parallel
Strand 5	E	440	442	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	333	first strand
Strand 2	E	343	345	anti-parallel
Strand 3	E	352	353	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	57	first strand
Strand 2	F	74	76	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	120	first strand
Strand 2	F	126	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VHL