Analysis of interatomic Contacts of Structural Units in PDB entry:
9VHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VHM entry

There are 2 chains in PDB entry 9VHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 491ASP 810
B
 GLN 491ASP 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9VHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 514Right-handed alpha
Helix 2
AA2
A
522 530Right-handed alpha
Helix 3
AA3
A
530 539Right-handed alpha
Helix 4
AA4
A
544 548Right-handed 310
Helix 5
AA5
A
554 559Right-handed 310
Helix 6
AA6
A
569 600Right-handed alpha
Helix 7
AA7
A
602 629Right-handed alpha
Helix 8
AA8
A
674 678Right-handed 310
Helix 9
AA9
A
722 727Right-handed alpha
Helix 10
AB1
A
758 763Right-handed 310
Helix 11
AB2
B
492 514Right-handed alpha
Helix 12
AB3
B
516 529Right-handed alpha
Helix 13
AB4
B
529 539Right-handed alpha
Helix 14
AB5
B
544 548Right-handed 310
Helix 15
AB6
B
569 599Right-handed alpha
Helix 16
AB7
B
602 629Right-handed alpha
Helix 17
AB8
B
674 678Right-handed 310
Helix 18
AB9
B
722 724Right-handed 310
Helix 19
AC1
B
725 730Right-handed alpha
Helix 20
AC2
B
758 763Right-handed 310
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There are 6 sheets in PDB entry 9VHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 646first strand
Strand 2
A
799 809anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 717first strand
Strand 2
A
656 665anti-parallel
Strand 3
A
779 790anti-parallel
Strand 4
A
766 774anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 698first strand
Strand 2
A
680 686anti-parallel
Strand 3
A
734 740anti-parallel
Strand 4
A
749 756anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
636 646first strand
Strand 2
B
799 809anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 717first strand
Strand 2
B
656 665anti-parallel
Strand 3
B
779 790anti-parallel
Strand 4
B
766 774anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
695 698first strand
Strand 2
B
680 686anti-parallel
Strand 3
B
734 740anti-parallel
Strand 4
B
749 756anti-parallel
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