Analysis of interatomic Contacts of Structural Units in PDB entry:
9VHU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VHU entry

There are 4 chains in PDB entry 9VHU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 61	MET 529
B	GLN 61	MET 529
C	GLN 61	MET 529
D	GLN 61	MET 529

There are 81 helices in PDB entry 9VHU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	76	Right-handed 310
Helix 2	AA2	A	112	114	Right-handed 310
Helix 3	AA3	A	116	133	Right-handed alpha
Helix 4	AA4	A	163	171	Right-handed alpha
Helix 5	AA5	A	175	196	Right-handed alpha
Helix 6	AA6	A	204	206	Right-handed 310
Helix 7	AA7	A	242	246	Right-handed 310
Helix 8	AA8	A	247	252	Right-handed alpha
Helix 9	AA9	A	258	274	Right-handed alpha
Helix 10	AB1	A	282	293	Right-handed alpha
Helix 11	AB2	A	300	305	Right-handed alpha
Helix 12	AB3	A	306	317	Right-handed alpha
Helix 13	AB4	A	326	332	Right-handed alpha
Helix 14	AB5	A	348	375	Right-handed alpha
Helix 15	AB6	A	377	392	Right-handed alpha
Helix 16	AB7	A	401	412	Right-handed alpha
Helix 17	AB8	A	415	428	Right-handed alpha
Helix 18	AB9	A	437	461	Right-handed alpha
Helix 19	AC1	A	472	481	Right-handed alpha
Helix 20	AC2	A	487	496	Right-handed alpha
Helix 21	AC3	A	508	515	Right-handed alpha
Helix 22	AC4	B	73	77	Right-handed alpha
Helix 23	AC5	B	116	133	Right-handed alpha
Helix 24	AC6	B	163	171	Right-handed alpha
Helix 25	AC7	B	175	196	Right-handed alpha
Helix 26	AC8	B	204	206	Right-handed 310
Helix 27	AC9	B	242	246	Right-handed 310
Helix 28	AD1	B	247	252	Right-handed alpha
Helix 29	AD2	B	258	274	Right-handed alpha
Helix 30	AD3	B	282	293	Right-handed alpha
Helix 31	AD4	B	300	305	Right-handed alpha
Helix 32	AD5	B	306	317	Right-handed alpha
Helix 33	AD6	B	326	332	Right-handed alpha
Helix 34	AD7	B	348	376	Right-handed alpha
Helix 35	AD8	B	377	392	Right-handed alpha
Helix 36	AD9	B	401	411	Right-handed alpha
Helix 37	AE1	B	415	430	Right-handed alpha
Helix 38	AE2	B	437	464	Right-handed alpha
Helix 39	AE3	B	472	483	Right-handed alpha
Helix 40	AE4	B	487	496	Right-handed alpha
Helix 41	AE5	B	508	516	Right-handed alpha
Helix 42	AE6	C	73	77	Right-handed alpha
Helix 43	AE7	C	112	114	Right-handed 310
Helix 44	AE8	C	116	133	Right-handed alpha
Helix 45	AE9	C	163	170	Right-handed alpha
Helix 46	AF1	C	175	195	Right-handed alpha
Helix 47	AF2	C	204	206	Right-handed 310
Helix 48	AF3	C	247	252	Right-handed alpha
Helix 49	AF4	C	258	274	Right-handed alpha
Helix 50	AF5	C	282	293	Right-handed alpha
Helix 51	AF6	C	300	305	Right-handed alpha
Helix 52	AF7	C	306	317	Right-handed alpha
Helix 53	AF8	C	326	331	Right-handed alpha
Helix 54	AF9	C	349	375	Right-handed alpha
Helix 55	AG1	C	377	391	Right-handed alpha
Helix 56	AG2	C	400	411	Right-handed alpha
Helix 57	AG3	C	416	428	Right-handed alpha
Helix 58	AG4	C	437	464	Right-handed alpha
Helix 59	AG5	C	472	483	Right-handed alpha
Helix 60	AG6	C	487	498	Right-handed alpha
Helix 61	AG7	C	510	519	Right-handed alpha
Helix 62	AG8	D	116	133	Right-handed alpha
Helix 63	AG9	D	163	171	Right-handed alpha
Helix 64	AH1	D	175	196	Right-handed alpha
Helix 65	AH2	D	204	206	Right-handed 310
Helix 66	AH3	D	242	246	Right-handed 310
Helix 67	AH4	D	247	252	Right-handed alpha
Helix 68	AH5	D	258	272	Right-handed alpha
Helix 69	AH6	D	282	293	Right-handed alpha
Helix 70	AH7	D	300	305	Right-handed alpha
Helix 71	AH8	D	306	317	Right-handed alpha
Helix 72	AH9	D	320	324	Right-handed 310
Helix 73	AI1	D	326	331	Right-handed alpha
Helix 74	AI2	D	348	375	Right-handed alpha
Helix 75	AI3	D	378	392	Right-handed alpha
Helix 76	AI4	D	401	412	Right-handed alpha
Helix 77	AI5	D	417	428	Right-handed alpha
Helix 78	AI6	D	437	464	Right-handed alpha
Helix 79	AI7	D	472	483	Right-handed alpha
Helix 80	AI8	D	487	497	Right-handed alpha
Helix 81	AI9	D	508	516	Right-handed alpha

There are 21 sheets in PDB entry 9VHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	86	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	103	110	anti-parallel
Strand 4	A	151	156	anti-parallel
Strand 5	A	142	147	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	228	229	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	219	221	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	434	436	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	506	507	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	90	97	anti-parallel
Strand 3	B	83	87	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	90	97	anti-parallel
Strand 3	B	103	110	anti-parallel
Strand 4	B	151	156	anti-parallel
Strand 5	B	142	147	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	228	229	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	219	221	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	400	first strand
Strand 2	B	434	436	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	471	first strand
Strand 2	B	506	507	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	86	first strand
Strand 2	C	91	97	anti-parallel
Strand 3	C	103	110	anti-parallel
Strand 4	C	151	156	anti-parallel
Strand 5	C	142	147	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	228	229	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	219	221	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	435	436	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	506	507	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	86	first strand
Strand 2	D	91	97	anti-parallel
Strand 3	D	103	110	anti-parallel
Strand 4	D	151	156	anti-parallel
Strand 5	D	142	147	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	199	first strand
Strand 2	D	228	229	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	219	221	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	400	first strand
Strand 2	D	434	436	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	471	first strand
Strand 2	D	506	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VHU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VHU