Analysis of interatomic Contacts of Structural Units in PDB entry:
9VHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VHW entry

There is 1 chain in PDB entry 9VHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 61HIS 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9VHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 77Right-handed alpha
Helix 2
AA2
A
116 134Right-handed alpha
Helix 3
AA3
A
163 172Right-handed alpha
Helix 4
AA4
A
175 196Right-handed alpha
Helix 5
AA5
A
204 206Right-handed 310
Helix 6
AA6
A
223 227Right-handed 310
Helix 7
AA7
A
242 246Right-handed 310
Helix 8
AA8
A
247 252Right-handed alpha
Helix 9
AA9
A
257 274Right-handed alpha
Helix 10
AB1
A
282 293Right-handed alpha
Helix 11
AB2
A
300 305Right-handed alpha
Helix 12
AB3
A
306 317Right-handed alpha
Helix 13
AB4
A
326 332Right-handed alpha
Helix 14
AB5
A
333 338Right-handed alpha
Helix 15
AB6
A
349 361Right-handed alpha
Helix 16
AB7
A
362 376Right-handed alpha
Helix 17
AB8
A
377 392Right-handed alpha
Helix 18
AB9
A
401 408Right-handed alpha
Helix 19
AC1
A
409 412Right-handed 310
Helix 20
AC2
A
416 428Right-handed alpha
Helix 21
AC3
A
437 445Right-handed alpha
Helix 22
AC4
A
446 450Right-handed 310
Helix 23
AC5
A
454 464Right-handed alpha
Helix 24
AC6
A
472 483Right-handed alpha
Helix 25
AC7
A
489 499Right-handed alpha
Helix 26
AC8
A
507 517Right-handed alpha
Helix 27
AC9
A
527 531Right-handed 310
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There are 4 sheets in PDB entry 9VHW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 87first strand
Strand 2
A
90 97anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
151 156anti-parallel
Strand 5
A
142 147anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
228 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
219 221anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
434 436anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il