Analysis of interatomic Contacts of Structural Units in PDB entry:
9VI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VI1 entry

There are 3 chains in PDB entry 9VI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ARG 512
B
 GLU 9ARG 512
C
 GLU 9ARG 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 9VI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
35 54Right-handed alpha
Helix 3
AA3
A
55 74Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
92 101Right-handed alpha
Helix 6
AA6
A
102 105Right-handed 310
Helix 7
AA7
A
106 110Right-handed 310
Helix 8
AA8
A
114 123Right-handed alpha
Helix 9
AA9
A
132 137Right-handed alpha
Helix 10
AB1
A
137 146Right-handed alpha
Helix 11
AB2
A
147 164Right-handed alpha
Helix 12
AB3
A
173 177Right-handed 310
Helix 13
AB4
A
178 183Right-handed alpha
Helix 14
AB5
A
184 187Right-handed 310
Helix 15
AB6
A
188 225Right-handed alpha
Helix 16
AB7
A
230 251Right-handed alpha
Helix 17
AB8
A
254 279Right-handed alpha
Helix 18
AB9
A
280 298Right-handed alpha
Helix 19
AC1
A
312 317Right-handed alpha
Helix 20
AC2
A
319 325Right-handed alpha
Helix 21
AC3
A
326 342Right-handed alpha
Helix 22
AC4
A
346 356Right-handed alpha
Helix 23
AC5
A
358 379Right-handed alpha
Helix 24
AC6
A
382 391Right-handed alpha
Helix 25
AC7
A
394 400Right-handed alpha
Helix 26
AC8
A
401 403Right-handed 310
Helix 27
AC9
A
405 435Right-handed alpha
Helix 28
AD1
A
449 469Right-handed alpha
Helix 29
AD2
A
470 482Right-handed alpha
Helix 30
AD3
A
482 487Right-handed alpha
Helix 31
AD4
A
487 512Right-handed alpha
Helix 32
AD5
B
16 29Right-handed alpha
Helix 33
AD6
B
35 54Right-handed alpha
Helix 34
AD7
B
54 75Right-handed alpha
Helix 35
AD8
B
76 80Right-handed 310
Helix 36
AD9
B
92 102Right-handed alpha
Helix 37
AE1
B
103 105Right-handed 310
Helix 38
AE2
B
106 111Right-handed 310
Helix 39
AE3
B
115 123Right-handed alpha
Helix 40
AE4
B
131 146Right-handed alpha
Helix 41
AE5
B
147 164Right-handed alpha
Helix 42
AE6
B
173 177Right-handed 310
Helix 43
AE7
B
178 183Right-handed alpha
Helix 44
AE8
B
184 187Right-handed 310
Helix 45
AE9
B
188 196Right-handed alpha
Helix 46
AF1
B
196 225Right-handed alpha
Helix 47
AF2
B
233 251Right-handed alpha
Helix 48
AF3
B
254 279Right-handed alpha
Helix 49
AF4
B
282 298Right-handed alpha
Helix 50
AF5
B
312 319Right-handed alpha
Helix 51
AF6
B
319 342Right-handed alpha
Helix 52
AF7
B
346 355Right-handed alpha
Helix 53
AF8
B
356 379Right-handed alpha
Helix 54
AF9
B
381 391Right-handed alpha
Helix 55
AG1
B
392 395Right-handed 310
Helix 56
AG2
B
396 401Right-handed alpha
Helix 57
AG3
B
405 435Right-handed alpha
Helix 58
AG4
B
447 469Right-handed alpha
Helix 59
AG5
B
470 482Right-handed alpha
Helix 60
AG6
B
483 510Right-handed alpha
Helix 61
AG7
C
20 29Right-handed alpha
Helix 62
AG8
C
29 35Right-handed alpha
Helix 63
AG9
C
35 54Right-handed alpha
Helix 64
AH1
C
54 75Right-handed alpha
Helix 65
AH2
C
76 80Right-handed 310
Helix 66
AH3
C
92 102Right-handed alpha
Helix 67
AH4
C
108 113Right-handed alpha
Helix 68
AH5
C
114 123Right-handed alpha
Helix 69
AH6
C
132 146Right-handed alpha
Helix 70
AH7
C
147 164Right-handed alpha
Helix 71
AH8
C
173 177Right-handed 310
Helix 72
AH9
C
178 183Right-handed alpha
Helix 73
AI1
C
184 187Right-handed 310
Helix 74
AI2
C
188 225Right-handed alpha
Helix 75
AI3
C
230 251Right-handed alpha
Helix 76
AI4
C
254 279Right-handed alpha
Helix 77
AI5
C
280 296Right-handed alpha
Helix 78
AI6
C
312 317Right-handed alpha
Helix 79
AI7
C
319 342Right-handed alpha
Helix 80
AI8
C
346 355Right-handed alpha
Helix 81
AI9
C
356 370Right-handed alpha
Helix 82
AJ1
C
370 379Right-handed alpha
Helix 83
AJ2
C
391 393Right-handed 310
Helix 84
AJ3
C
394 401Right-handed alpha
Helix 85
AJ4
C
405 437Right-handed alpha
Helix 86
AJ5
C
447 470Right-handed alpha
Helix 87
AJ6
C
470 482Right-handed alpha
Helix 88
AJ7
C
487 512Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9VI1.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
437 438anti-parallel
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