Analysis of interatomic Contacts of Structural Units in PDB entry:
9VI5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VI5 entry

There are 2 chains in PDB entry 9VI5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4PHE 307
B
 LYS 4PHE 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9VI5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
35 49Right-handed alpha
Helix 3
AA3
A
57 74Right-handed alpha
Helix 4
AA4
A
91 102Right-handed alpha
Helix 5
AA5
A
120 134Right-handed alpha
Helix 6
AA6
A
148 165Right-handed alpha
Helix 7
AA7
A
166 172Right-handed 310
Helix 8
AA8
A
185 191Right-handed alpha
Helix 9
AA9
A
194 209Right-handed alpha
Helix 10
AB1
A
233 246Right-handed alpha
Helix 11
AB2
A
261 266Right-handed alpha
Helix 12
AB3
A
270 280Right-handed alpha
Helix 13
AB4
A
292 307Right-handed alpha
Helix 14
AB5
B
17 29Right-handed alpha
Helix 15
AB6
B
35 49Right-handed alpha
Helix 16
AB7
B
51 56Right-handed alpha
Helix 17
AB8
B
57 74Right-handed alpha
Helix 18
AB9
B
91 102Right-handed alpha
Helix 19
AC1
B
120 135Right-handed alpha
Helix 20
AC2
B
148 165Right-handed alpha
Helix 21
AC3
B
169 172Right-handed 310
Helix 22
AC4
B
184 191Right-handed alpha
Helix 23
AC5
B
194 210Right-handed alpha
Helix 24
AC6
B
233 246Right-handed alpha
Helix 25
AC7
B
261 266Right-handed alpha
Helix 26
AC8
B
270 280Right-handed alpha
Helix 27
AC9
B
292 307Right-handed alpha
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There are 4 sheets in PDB entry 9VI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 85first strand
Strand 2
A
5 11parallel
Strand 3
A
106 111parallel
Strand 4
A
138 141parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 220first strand
Strand 2
A
174 181parallel
Strand 3
A
249 253parallel
Strand 4
A
282 284parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 85first strand
Strand 2
B
5 11parallel
Strand 3
B
106 111parallel
Strand 4
B
138 141parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 220first strand
Strand 2
B
174 181parallel
Strand 3
B
249 253parallel
Strand 4
B
282 284parallel
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