Analysis of interatomic Contacts of Structural Units in PDB entry:
9VIA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VIA entry

There are 8 chains in PDB entry 9VIA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 2	GLU 754
C	MET 1	GLU 754
D	THR 5	SER 141
E	GLU 3	SER 141
F	LYS 2	VAL 752
G	MET 1	GLU 754
H	SER 2	SER 141
I	MET 1	SER 141

There are191 helices in PDB entry 9VIA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	12	Right-handed alpha
Helix 2	AA2	B	13	18	Right-handed 310
Helix 3	AA3	B	24	28	Right-handed 310
Helix 4	AA4	B	58	60	Right-handed 310
Helix 5	AA5	B	61	71	Right-handed alpha
Helix 6	AA6	B	73	82	Right-handed alpha
Helix 7	AA7	B	84	94	Right-handed alpha
Helix 8	AA8	B	98	107	Right-handed alpha
Helix 9	AA9	B	110	119	Right-handed alpha
Helix 10	AB1	B	122	134	Right-handed alpha
Helix 11	AB2	B	151	166	Right-handed alpha
Helix 12	AB3	B	176	178	Right-handed 310
Helix 13	AB4	B	179	195	Right-handed alpha
Helix 14	AB5	B	205	215	Right-handed alpha
Helix 15	AB6	B	229	236	Right-handed alpha
Helix 16	AB7	B	239	252	Right-handed alpha
Helix 17	AB8	B	264	270	Right-handed alpha
Helix 18	AB9	B	276	291	Right-handed alpha
Helix 19	AC1	B	300	302	Right-handed 310
Helix 20	AC2	B	303	308	Right-handed alpha
Helix 21	AC3	B	312	327	Right-handed alpha
Helix 22	AC4	B	342	355	Right-handed alpha
Helix 23	AC5	B	369	373	Right-handed 310
Helix 24	AC6	B	381	383	Right-handed 310
Helix 25	AC7	B	384	396	Right-handed alpha
Helix 26	AC8	B	405	428	Right-handed alpha
Helix 27	AC9	B	433	442	Right-handed alpha
Helix 28	AD1	B	445	449	Right-handed 310
Helix 29	AD2	B	453	467	Right-handed alpha
Helix 30	AD3	B	470	481	Right-handed alpha
Helix 31	AD4	B	483	500	Right-handed alpha
Helix 32	AD5	B	501	504	Right-handed 310
Helix 33	AD6	B	535	544	Right-handed alpha
Helix 34	AD7	B	610	625	Right-handed alpha
Helix 35	AD8	B	639	651	Right-handed alpha
Helix 36	AD9	B	683	687	Right-handed 310
Helix 37	AE1	B	688	704	Right-handed alpha
Helix 38	AE2	B	718	736	Right-handed alpha
Helix 39	AE3	C	4	12	Right-handed alpha
Helix 40	AE4	C	13	18	Right-handed 310
Helix 41	AE5	C	24	28	Right-handed 310
Helix 42	AE6	C	56	60	Right-handed 310
Helix 43	AE7	C	61	71	Right-handed alpha
Helix 44	AE8	C	76	81	Right-handed alpha
Helix 45	AE9	C	84	94	Right-handed alpha
Helix 46	AF1	C	98	107	Right-handed alpha
Helix 47	AF2	C	110	119	Right-handed alpha
Helix 48	AF3	C	122	134	Right-handed alpha
Helix 49	AF4	C	151	165	Right-handed alpha
Helix 50	AF5	C	176	178	Right-handed 310
Helix 51	AF6	C	179	195	Right-handed alpha
Helix 52	AF7	C	205	215	Right-handed alpha
Helix 53	AF8	C	229	236	Right-handed alpha
Helix 54	AF9	C	239	252	Right-handed alpha
Helix 55	AG1	C	264	269	Right-handed alpha
Helix 56	AG2	C	276	291	Right-handed alpha
Helix 57	AG3	C	300	302	Right-handed 310
Helix 58	AG4	C	303	308	Right-handed alpha
Helix 59	AG5	C	312	327	Right-handed alpha
Helix 60	AG6	C	342	355	Right-handed alpha
Helix 61	AG7	C	381	383	Right-handed 310
Helix 62	AG8	C	384	396	Right-handed alpha
Helix 63	AG9	C	405	428	Right-handed alpha
Helix 64	AH1	C	433	442	Right-handed alpha
Helix 65	AH2	C	445	449	Right-handed 310
Helix 66	AH3	C	453	467	Right-handed alpha
Helix 67	AH4	C	470	481	Right-handed alpha
Helix 68	AH5	C	483	500	Right-handed alpha
Helix 69	AH6	C	501	504	Right-handed 310
Helix 70	AH7	C	535	544	Right-handed alpha
Helix 71	AH8	C	550	554	Right-handed 310
Helix 72	AH9	C	610	624	Right-handed alpha
Helix 73	AI1	C	639	651	Right-handed alpha
Helix 74	AI2	C	683	687	Right-handed 310
Helix 75	AI3	C	688	704	Right-handed alpha
Helix 76	AI4	C	718	736	Right-handed alpha
Helix 77	AI5	D	7	11	Right-handed 310
Helix 78	AI6	D	12	17	Right-handed alpha
Helix 79	AI7	D	18	21	Right-handed 310
Helix 80	AI8	D	28	32	Right-handed 310
Helix 81	AI9	D	33	38	Right-handed alpha
Helix 82	AJ1	D	50	64	Right-handed alpha
Helix 83	AJ2	D	66	78	Right-handed alpha
Helix 84	AJ3	D	83	95	Right-handed alpha
Helix 85	AJ4	D	100	114	Right-handed alpha
Helix 86	AJ5	D	117	135	Right-handed alpha
Helix 87	AJ6	E	7	11	Right-handed 310
Helix 88	AJ7	E	12	17	Right-handed alpha
Helix 89	AJ8	E	18	21	Right-handed 310
Helix 90	AJ9	E	28	32	Right-handed 310
Helix 91	AK1	E	33	40	Right-handed alpha
Helix 92	AK2	E	50	64	Right-handed alpha
Helix 93	AK3	E	66	78	Right-handed alpha
Helix 94	AK4	E	83	95	Right-handed alpha
Helix 95	AK5	E	100	114	Right-handed alpha
Helix 96	AK6	E	117	134	Right-handed alpha
Helix 97	AK7	F	4	12	Right-handed alpha
Helix 98	AK8	F	13	18	Right-handed 310
Helix 99	AK9	F	24	28	Right-handed 310
Helix 100	AL1	F	58	60	Right-handed 310
Helix 101	AL2	F	61	71	Right-handed alpha
Helix 102	AL3	F	76	81	Right-handed alpha
Helix 103	AL4	F	84	94	Right-handed alpha
Helix 104	AL5	F	98	107	Right-handed alpha
Helix 105	AL6	F	110	119	Right-handed alpha
Helix 106	AL7	F	122	134	Right-handed alpha
Helix 107	AL8	F	151	166	Right-handed alpha
Helix 108	AL9	F	176	178	Right-handed 310
Helix 109	AM1	F	179	195	Right-handed alpha
Helix 110	AM2	F	205	215	Right-handed alpha
Helix 111	AM3	F	229	236	Right-handed alpha
Helix 112	AM4	F	239	252	Right-handed alpha
Helix 113	AM5	F	264	269	Right-handed alpha
Helix 114	AM6	F	276	292	Right-handed alpha
Helix 115	AM7	F	300	302	Right-handed 310
Helix 116	AM8	F	303	308	Right-handed alpha
Helix 117	AM9	F	312	327	Right-handed alpha
Helix 118	AN1	F	343	355	Right-handed alpha
Helix 119	AN2	F	381	383	Right-handed 310
Helix 120	AN3	F	384	396	Right-handed alpha
Helix 121	AN4	F	405	428	Right-handed alpha
Helix 122	AN5	F	433	443	Right-handed alpha
Helix 123	AN6	F	453	467	Right-handed alpha
Helix 124	AN7	F	470	481	Right-handed alpha
Helix 125	AN8	F	483	500	Right-handed alpha
Helix 126	AN9	F	501	504	Right-handed 310
Helix 127	AO1	F	535	544	Right-handed alpha
Helix 128	AO2	F	610	624	Right-handed alpha
Helix 129	AO3	F	639	650	Right-handed alpha
Helix 130	AO4	F	683	687	Right-handed 310
Helix 131	AO5	F	688	704	Right-handed alpha
Helix 132	AO6	F	718	737	Right-handed alpha
Helix 133	AO7	G	4	12	Right-handed alpha
Helix 134	AO8	G	13	18	Right-handed 310
Helix 135	AO9	G	24	28	Right-handed 310
Helix 136	AP1	G	58	60	Right-handed 310
Helix 137	AP2	G	61	71	Right-handed alpha
Helix 138	AP3	G	73	81	Right-handed alpha
Helix 139	AP4	G	84	94	Right-handed alpha
Helix 140	AP5	G	98	107	Right-handed alpha
Helix 141	AP6	G	110	119	Right-handed alpha
Helix 142	AP7	G	122	134	Right-handed alpha
Helix 143	AP8	G	151	166	Right-handed alpha
Helix 144	AP9	G	176	178	Right-handed 310
Helix 145	AQ1	G	179	195	Right-handed alpha
Helix 146	AQ2	G	205	215	Right-handed alpha
Helix 147	AQ3	G	229	236	Right-handed alpha
Helix 148	AQ4	G	239	252	Right-handed alpha
Helix 149	AQ5	G	264	269	Right-handed alpha
Helix 150	AQ6	G	276	291	Right-handed alpha
Helix 151	AQ7	G	300	302	Right-handed 310
Helix 152	AQ8	G	303	308	Right-handed alpha
Helix 153	AQ9	G	312	327	Right-handed alpha
Helix 154	AR1	G	342	355	Right-handed alpha
Helix 155	AR2	G	369	373	Right-handed 310
Helix 156	AR3	G	381	383	Right-handed 310
Helix 157	AR4	G	384	395	Right-handed alpha
Helix 158	AR5	G	405	428	Right-handed alpha
Helix 159	AR6	G	433	443	Right-handed alpha
Helix 160	AR7	G	445	449	Right-handed 310
Helix 161	AR8	G	453	467	Right-handed alpha
Helix 162	AR9	G	470	481	Right-handed alpha
Helix 163	AS1	G	483	500	Right-handed alpha
Helix 164	AS2	G	501	504	Right-handed 310
Helix 165	AS3	G	535	544	Right-handed alpha
Helix 166	AS4	G	550	554	Right-handed 310
Helix 167	AS5	G	610	624	Right-handed alpha
Helix 168	AS6	G	639	651	Right-handed alpha
Helix 169	AS7	G	683	687	Right-handed 310
Helix 170	AS8	G	688	704	Right-handed alpha
Helix 171	AS9	G	718	736	Right-handed alpha
Helix 172	AT1	H	7	11	Right-handed 310
Helix 173	AT2	H	12	17	Right-handed alpha
Helix 174	AT3	H	18	21	Right-handed 310
Helix 175	AT4	H	28	32	Right-handed 310
Helix 176	AT5	H	33	39	Right-handed alpha
Helix 177	AT6	H	50	64	Right-handed alpha
Helix 178	AT7	H	66	78	Right-handed alpha
Helix 179	AT8	H	83	95	Right-handed alpha
Helix 180	AT9	H	100	114	Right-handed alpha
Helix 181	AU1	H	117	134	Right-handed alpha
Helix 182	AU2	I	7	11	Right-handed 310
Helix 183	AU3	I	12	17	Right-handed alpha
Helix 184	AU4	I	18	21	Right-handed 310
Helix 185	AU5	I	28	32	Right-handed 310
Helix 186	AU6	I	33	40	Right-handed alpha
Helix 187	AU7	I	50	64	Right-handed alpha
Helix 188	AU8	I	66	78	Right-handed alpha
Helix 189	AU9	I	83	95	Right-handed alpha
Helix 190	AV1	I	100	114	Right-handed alpha
Helix 191	AV2	I	117	134	Right-handed alpha

There are 20 sheets in PDB entry 9VIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	55	56	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	169	172	parallel
Strand 3	B	140	144	parallel
Strand 4	B	360	366	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	256	260	parallel
Strand 3	B	295	297	parallel
Strand 4	B	330	332	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	515	516	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	580	first strand
Strand 2	B	745	753	anti-parallel
Strand 3	B	628	633	anti-parallel
Strand 4	B	589	594	parallel
Strand 5	B	655	659	parallel
Strand 6	B	665	669	anti-parallel
Strand 7	B	679	681	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	49	52	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	169	172	parallel
Strand 3	C	141	144	parallel
Strand 4	C	362	366	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	225	first strand
Strand 2	C	256	260	parallel
Strand 3	C	295	297	parallel
Strand 4	C	330	332	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	509	first strand
Strand 2	C	515	516	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	580	first strand
Strand 2	C	745	752	anti-parallel
Strand 3	C	628	633	anti-parallel
Strand 4	C	589	594	parallel
Strand 5	C	655	659	parallel
Strand 6	C	665	669	anti-parallel
Strand 7	C	679	681	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	45	first strand
Strand 2	F	48	52	anti-parallel
Strand 3	F	55	56	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	202	first strand
Strand 2	F	169	172	parallel
Strand 3	F	140	144	parallel
Strand 4	F	360	366	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	225	first strand
Strand 2	F	256	260	parallel
Strand 3	F	295	297	parallel
Strand 4	F	330	332	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	508	509	first strand
Strand 2	F	515	516	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	572	580	first strand
Strand 2	F	745	752	anti-parallel
Strand 3	F	628	633	anti-parallel
Strand 4	F	589	594	parallel
Strand 5	F	655	659	parallel
Strand 6	F	665	669	anti-parallel
Strand 7	F	679	681	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	45	first strand
Strand 2	G	48	52	anti-parallel
Strand 3	G	55	56	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	202	first strand
Strand 2	G	169	172	parallel
Strand 3	G	140	144	parallel
Strand 4	G	360	366	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	225	first strand
Strand 2	G	256	260	parallel
Strand 3	G	295	297	parallel
Strand 4	G	330	332	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	508	509	first strand
Strand 2	G	515	516	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	574	580	first strand
Strand 2	G	745	750	anti-parallel
Strand 3	G	628	633	anti-parallel
Strand 4	G	589	594	parallel
Strand 5	G	655	659	parallel
Strand 6	G	665	669	anti-parallel
Strand 7	G	679	681	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VIA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VIA