Analysis of interatomic Contacts of Structural Units in PDB entry:
9VII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VII entry

There are 2 chains in PDB entry 9VII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 2	VAL 752
C	LYS 2	VAL 591

There are185 helices in PDB entry 9VII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	12	Right-handed alpha
Helix 2	AA2	B	13	18	Right-handed 310
Helix 3	AA3	B	24	28	Right-handed 310
Helix 4	AA4	B	56	60	Right-handed 310
Helix 5	AA5	B	61	71	Right-handed alpha
Helix 6	AA6	B	73	81	Right-handed alpha
Helix 7	AA7	B	84	94	Right-handed alpha
Helix 8	AA8	B	98	107	Right-handed alpha
Helix 9	AA9	B	110	119	Right-handed alpha
Helix 10	AB1	B	122	134	Right-handed alpha
Helix 11	AB2	B	151	165	Right-handed alpha
Helix 12	AB3	B	176	178	Right-handed 310
Helix 13	AB4	B	179	195	Right-handed alpha
Helix 14	AB5	B	207	215	Right-handed alpha
Helix 15	AB6	B	229	236	Right-handed alpha
Helix 16	AB7	B	239	253	Right-handed alpha
Helix 17	AB8	B	264	269	Right-handed alpha
Helix 18	AB9	B	276	291	Right-handed alpha
Helix 19	AC1	B	300	302	Right-handed 310
Helix 20	AC2	B	303	308	Right-handed alpha
Helix 21	AC3	B	312	327	Right-handed alpha
Helix 22	AC4	B	342	355	Right-handed alpha
Helix 23	AC5	B	369	373	Right-handed 310
Helix 24	AC6	B	381	383	Right-handed 310
Helix 25	AC7	B	384	396	Right-handed alpha
Helix 26	AC8	B	405	427	Right-handed alpha
Helix 27	AC9	B	433	442	Right-handed alpha
Helix 28	AD1	B	445	449	Right-handed 310
Helix 29	AD2	B	453	467	Right-handed alpha
Helix 30	AD3	B	470	481	Right-handed alpha
Helix 31	AD4	B	483	500	Right-handed alpha
Helix 32	AD5	B	501	504	Right-handed 310
Helix 33	AD6	B	535	544	Right-handed alpha
Helix 34	AD7	B	610	624	Right-handed alpha
Helix 35	AD8	B	639	650	Right-handed alpha
Helix 36	AD9	B	688	703	Right-handed alpha
Helix 37	AE1	B	718	736	Right-handed alpha
Helix 38	AE2	C	4	12	Right-handed alpha
Helix 39	AE3	C	13	18	Right-handed 310
Helix 40	AE4	C	24	28	Right-handed 310
Helix 41	AE5	C	58	60	Right-handed 310
Helix 42	AE6	C	61	71	Right-handed alpha
Helix 43	AE7	C	73	81	Right-handed alpha
Helix 44	AE8	C	84	94	Right-handed alpha
Helix 45	AE9	C	98	107	Right-handed alpha
Helix 46	AF1	C	110	119	Right-handed alpha
Helix 47	AF2	C	122	130	Right-handed alpha
Helix 48	AF3	C	151	165	Right-handed alpha
Helix 49	AF4	C	176	178	Right-handed 310
Helix 50	AF5	C	179	195	Right-handed alpha
Helix 51	AF6	C	205	215	Right-handed alpha
Helix 52	AF7	C	229	235	Right-handed alpha
Helix 53	AF8	C	239	253	Right-handed alpha
Helix 54	AF9	C	264	270	Right-handed alpha
Helix 55	AG1	C	276	291	Right-handed alpha
Helix 56	AG2	C	300	302	Right-handed 310
Helix 57	AG3	C	303	308	Right-handed alpha
Helix 58	AG4	C	312	327	Right-handed alpha
Helix 59	AG5	C	342	355	Right-handed alpha
Helix 60	AG6	C	381	383	Right-handed 310
Helix 61	AG7	C	384	396	Right-handed alpha
Helix 62	AG8	C	405	427	Right-handed alpha
Helix 63	AG9	C	433	443	Right-handed alpha
Helix 64	AH1	C	453	467	Right-handed alpha
Helix 65	AH2	C	470	481	Right-handed alpha
Helix 66	AH3	C	483	500	Right-handed alpha
Helix 67	AH4	C	501	504	Right-handed 310
Helix 68	AH5	C	535	544	Right-handed alpha
Helix 69	AH6	C	610	624	Right-handed alpha
Helix 70	AH7	C	639	651	Right-handed alpha
Helix 71	AH8	C	683	687	Right-handed 310
Helix 72	AH9	C	688	704	Right-handed alpha
Helix 73	AI1	C	718	736	Right-handed alpha
Helix 74	AI2	D	7	11	Right-handed 310
Helix 75	AI3	D	12	17	Right-handed alpha
Helix 76	AI4	D	18	21	Right-handed 310
Helix 77	AI5	D	28	32	Right-handed 310
Helix 78	AI6	D	33	38	Right-handed alpha
Helix 79	AI7	D	50	63	Right-handed alpha
Helix 80	AI8	D	67	76	Right-handed alpha
Helix 81	AI9	D	83	95	Right-handed alpha
Helix 82	AJ1	D	100	114	Right-handed alpha
Helix 83	AJ2	D	117	134	Right-handed alpha
Helix 84	AJ3	E	7	11	Right-handed 310
Helix 85	AJ4	E	12	17	Right-handed alpha
Helix 86	AJ5	E	28	32	Right-handed 310
Helix 87	AJ6	E	33	39	Right-handed alpha
Helix 88	AJ7	E	43	47	Right-handed 310
Helix 89	AJ8	E	50	64	Right-handed alpha
Helix 90	AJ9	E	66	78	Right-handed alpha
Helix 91	AK1	E	83	94	Right-handed alpha
Helix 92	AK2	E	100	114	Right-handed alpha
Helix 93	AK3	E	117	134	Right-handed alpha
Helix 94	AK4	G	4	12	Right-handed alpha
Helix 95	AK5	G	13	18	Right-handed 310
Helix 96	AK6	G	24	28	Right-handed 310
Helix 97	AK7	G	56	60	Right-handed 310
Helix 98	AK8	G	61	71	Right-handed alpha
Helix 99	AK9	G	76	81	Right-handed alpha
Helix 100	AL1	G	84	94	Right-handed alpha
Helix 101	AL2	G	98	107	Right-handed alpha
Helix 102	AL3	G	110	120	Right-handed alpha
Helix 103	AL4	G	122	134	Right-handed alpha
Helix 104	AL5	G	151	166	Right-handed alpha
Helix 105	AL6	G	176	178	Right-handed 310
Helix 106	AL7	G	179	195	Right-handed alpha
Helix 107	AL8	G	205	215	Right-handed alpha
Helix 108	AL9	G	229	236	Right-handed alpha
Helix 109	AM1	G	239	253	Right-handed alpha
Helix 110	AM2	G	264	270	Right-handed alpha
Helix 111	AM3	G	276	291	Right-handed alpha
Helix 112	AM4	G	300	302	Right-handed 310
Helix 113	AM5	G	303	308	Right-handed alpha
Helix 114	AM6	G	312	326	Right-handed alpha
Helix 115	AM7	G	342	355	Right-handed alpha
Helix 116	AM8	G	369	373	Right-handed 310
Helix 117	AM9	G	381	383	Right-handed 310
Helix 118	AN1	G	384	396	Right-handed alpha
Helix 119	AN2	G	405	428	Right-handed alpha
Helix 120	AN3	G	433	442	Right-handed alpha
Helix 121	AN4	G	445	449	Right-handed 310
Helix 122	AN5	G	453	467	Right-handed alpha
Helix 123	AN6	G	470	481	Right-handed alpha
Helix 124	AN7	G	483	500	Right-handed alpha
Helix 125	AN8	G	501	504	Right-handed 310
Helix 126	AN9	G	535	544	Right-handed alpha
Helix 127	AO1	G	610	624	Right-handed alpha
Helix 128	AO2	G	639	651	Right-handed alpha
Helix 129	AO3	G	683	687	Right-handed 310
Helix 130	AO4	G	688	704	Right-handed alpha
Helix 131	AO5	G	718	737	Right-handed alpha
Helix 132	AO6	H	4	12	Right-handed alpha
Helix 133	AO7	H	13	18	Right-handed 310
Helix 134	AO8	H	24	28	Right-handed 310
Helix 135	AO9	H	58	60	Right-handed 310
Helix 136	AP1	H	61	72	Right-handed alpha
Helix 137	AP2	H	73	81	Right-handed alpha
Helix 138	AP3	H	84	94	Right-handed alpha
Helix 139	AP4	H	98	107	Right-handed alpha
Helix 140	AP5	H	110	119	Right-handed alpha
Helix 141	AP6	H	122	134	Right-handed alpha
Helix 142	AP7	H	151	165	Right-handed alpha
Helix 143	AP8	H	176	178	Right-handed 310
Helix 144	AP9	H	179	195	Right-handed alpha
Helix 145	AQ1	H	205	215	Right-handed alpha
Helix 146	AQ2	H	229	236	Right-handed alpha
Helix 147	AQ3	H	239	253	Right-handed alpha
Helix 148	AQ4	H	264	269	Right-handed alpha
Helix 149	AQ5	H	276	291	Right-handed alpha
Helix 150	AQ6	H	300	302	Right-handed 310
Helix 151	AQ7	H	303	308	Right-handed alpha
Helix 152	AQ8	H	312	327	Right-handed alpha
Helix 153	AQ9	H	342	355	Right-handed alpha
Helix 154	AR1	H	369	373	Right-handed 310
Helix 155	AR2	H	381	383	Right-handed 310
Helix 156	AR3	H	384	396	Right-handed alpha
Helix 157	AR4	H	405	427	Right-handed alpha
Helix 158	AR5	H	433	442	Right-handed alpha
Helix 159	AR6	H	453	466	Right-handed alpha
Helix 160	AR7	H	467	469	Right-handed 310
Helix 161	AR8	H	470	481	Right-handed alpha
Helix 162	AR9	H	483	500	Right-handed alpha
Helix 163	AS1	H	501	504	Right-handed 310
Helix 164	AS2	H	535	544	Right-handed alpha
Helix 165	AS3	H	610	624	Right-handed alpha
Helix 166	AS4	H	639	651	Right-handed alpha
Helix 167	AS5	H	688	704	Right-handed alpha
Helix 168	AS6	H	718	736	Right-handed alpha
Helix 169	AS7	I	7	11	Right-handed 310
Helix 170	AS8	I	12	17	Right-handed alpha
Helix 171	AS9	I	28	32	Right-handed 310
Helix 172	AT1	I	33	39	Right-handed alpha
Helix 173	AT2	I	50	64	Right-handed alpha
Helix 174	AT3	I	66	79	Right-handed alpha
Helix 175	AT4	I	83	95	Right-handed alpha
Helix 176	AT5	I	100	114	Right-handed alpha
Helix 177	AT6	I	117	134	Right-handed alpha
Helix 178	AT7	J	7	11	Right-handed 310
Helix 179	AT8	J	12	17	Right-handed alpha
Helix 180	AT9	J	33	39	Right-handed alpha
Helix 181	AU1	J	50	64	Right-handed alpha
Helix 182	AU2	J	66	77	Right-handed alpha
Helix 183	AU3	J	83	95	Right-handed alpha
Helix 184	AU4	J	100	114	Right-handed alpha
Helix 185	AU5	J	117	134	Right-handed alpha

There are 21 sheets in PDB entry 9VII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	48	52	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	169	172	parallel
Strand 3	B	140	144	parallel
Strand 4	B	360	366	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	256	260	parallel
Strand 3	B	295	297	parallel
Strand 4	B	330	331	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	515	516	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	750	751	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	681	first strand
Strand 2	B	665	669	anti-parallel
Strand 3	B	655	659	anti-parallel
Strand 4	B	589	594	parallel
Strand 5	B	628	633	parallel
Strand 6	B	745	746	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	49	52	anti-parallel
Strand 3	C	55	56	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	169	172	parallel
Strand 3	C	140	144	parallel
Strand 4	C	360	366	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	225	first strand
Strand 2	C	256	260	parallel
Strand 3	C	295	298	parallel
Strand 4	C	330	333	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	509	first strand
Strand 2	C	515	516	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	580	first strand
Strand 2	C	745	750	anti-parallel
Strand 3	C	628	633	anti-parallel
Strand 4	C	589	594	parallel
Strand 5	C	655	659	parallel
Strand 6	C	665	669	anti-parallel
Strand 7	C	679	681	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	44	first strand
Strand 2	G	49	52	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	202	first strand
Strand 2	G	169	172	parallel
Strand 3	G	140	144	parallel
Strand 4	G	360	366	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	225	first strand
Strand 2	G	256	260	parallel
Strand 3	G	295	297	parallel
Strand 4	G	330	331	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	508	509	first strand
Strand 2	G	515	516	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	573	580	first strand
Strand 2	G	745	751	anti-parallel
Strand 3	G	628	633	anti-parallel
Strand 4	G	589	594	parallel
Strand 5	G	655	659	parallel
Strand 6	G	665	669	anti-parallel
Strand 7	G	679	681	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	44	first strand
Strand 2	H	49	52	anti-parallel
Strand 3	H	55	56	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	202	first strand
Strand 2	H	169	172	parallel
Strand 3	H	140	144	parallel
Strand 4	H	360	366	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	220	225	first strand
Strand 2	H	256	260	parallel
Strand 3	H	295	298	parallel
Strand 4	H	330	333	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	508	509	first strand
Strand 2	H	515	516	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	574	580	first strand
Strand 2	H	745	750	anti-parallel
Strand 3	H	628	633	anti-parallel
Strand 4	H	589	594	parallel
Strand 5	H	655	659	parallel
Strand 6	H	665	669	anti-parallel
Strand 7	H	679	681	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VII

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VII