Analysis of interatomic Contacts of Structural Units in PDB entry:
9VIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VIJ entry

There are 2 chains in PDB entry 9VIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 2VAL 752
C
 LYS 2VAL 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 9VIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 12Right-handed alpha
Helix 2
AA2
B
13 18Right-handed 310
Helix 3
AA3
B
24 28Right-handed 310
Helix 4
AA4
B
61 69Right-handed alpha
Helix 5
AA5
B
73 81Right-handed alpha
Helix 6
AA6
B
84 94Right-handed alpha
Helix 7
AA7
B
98 107Right-handed alpha
Helix 8
AA8
B
110 119Right-handed alpha
Helix 9
AA9
B
122 134Right-handed alpha
Helix 10
AB1
B
151 166Right-handed alpha
Helix 11
AB2
B
176 178Right-handed 310
Helix 12
AB3
B
179 195Right-handed alpha
Helix 13
AB4
B
205 215Right-handed alpha
Helix 14
AB5
B
229 236Right-handed alpha
Helix 15
AB6
B
239 253Right-handed alpha
Helix 16
AB7
B
264 269Right-handed alpha
Helix 17
AB8
B
276 292Right-handed alpha
Helix 18
AB9
B
300 302Right-handed 310
Helix 19
AC1
B
303 308Right-handed alpha
Helix 20
AC2
B
312 327Right-handed alpha
Helix 21
AC3
B
342 355Right-handed alpha
Helix 22
AC4
B
369 373Right-handed 310
Helix 23
AC5
B
381 383Right-handed 310
Helix 24
AC6
B
384 396Right-handed alpha
Helix 25
AC7
B
405 428Right-handed alpha
Helix 26
AC8
B
433 442Right-handed alpha
Helix 27
AC9
B
453 467Right-handed alpha
Helix 28
AD1
B
470 481Right-handed alpha
Helix 29
AD2
B
483 500Right-handed alpha
Helix 30
AD3
B
501 504Right-handed 310
Helix 31
AD4
B
535 544Right-handed alpha
Helix 32
AD5
B
610 624Right-handed alpha
Helix 33
AD6
B
639 651Right-handed alpha
Helix 34
AD7
B
683 687Right-handed 310
Helix 35
AD8
B
688 704Right-handed alpha
Helix 36
AD9
B
719 736Right-handed alpha
Helix 37
AE1
C
4 12Right-handed alpha
Helix 38
AE2
C
13 18Right-handed 310
Helix 39
AE3
C
24 28Right-handed 310
Helix 40
AE4
C
56 60Right-handed 310
Helix 41
AE5
C
61 71Right-handed alpha
Helix 42
AE6
C
76 81Right-handed alpha
Helix 43
AE7
C
84 94Right-handed alpha
Helix 44
AE8
C
98 107Right-handed alpha
Helix 45
AE9
C
110 119Right-handed alpha
Helix 46
AF1
C
122 134Right-handed alpha
Helix 47
AF2
C
151 165Right-handed alpha
Helix 48
AF3
C
176 178Right-handed 310
Helix 49
AF4
C
179 195Right-handed alpha
Helix 50
AF5
C
205 215Right-handed alpha
Helix 51
AF6
C
229 236Right-handed alpha
Helix 52
AF7
C
239 252Right-handed alpha
Helix 53
AF8
C
264 269Right-handed alpha
Helix 54
AF9
C
276 291Right-handed alpha
Helix 55
AG1
C
300 302Right-handed 310
Helix 56
AG2
C
303 308Right-handed alpha
Helix 57
AG3
C
312 326Right-handed alpha
Helix 58
AG4
C
342 355Right-handed alpha
Helix 59
AG5
C
369 373Right-handed 310
Helix 60
AG6
C
384 396Right-handed alpha
Helix 61
AG7
C
405 428Right-handed alpha
Helix 62
AG8
C
433 442Right-handed alpha
Helix 63
AG9
C
445 449Right-handed 310
Helix 64
AH1
C
453 467Right-handed alpha
Helix 65
AH2
C
470 480Right-handed alpha
Helix 66
AH3
C
483 500Right-handed alpha
Helix 67
AH4
C
501 504Right-handed 310
Helix 68
AH5
C
535 544Right-handed alpha
Helix 69
AH6
C
610 624Right-handed alpha
Helix 70
AH7
C
639 651Right-handed alpha
Helix 71
AH8
C
683 687Right-handed 310
Helix 72
AH9
C
688 704Right-handed alpha
Helix 73
AI1
C
719 736Right-handed alpha
Helix 74
AI2
D
7 11Right-handed 310
Helix 75
AI3
D
28 32Right-handed 310
Helix 76
AI4
D
35 39Right-handed 310
Helix 77
AI5
D
50 64Right-handed alpha
Helix 78
AI6
D
66 78Right-handed alpha
Helix 79
AI7
D
83 95Right-handed alpha
Helix 80
AI8
D
100 109Right-handed alpha
Helix 81
AI9
D
109 114Right-handed alpha
Helix 82
AJ1
D
117 134Right-handed alpha
Helix 83
AJ2
E
7 11Right-handed 310
Helix 84
AJ3
E
33 40Right-handed alpha
Helix 85
AJ4
E
50 64Right-handed alpha
Helix 86
AJ5
E
66 79Right-handed alpha
Helix 87
AJ6
E
86 95Right-handed alpha
Helix 88
AJ7
E
100 114Right-handed alpha
Helix 89
AJ8
E
117 134Right-handed alpha
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There are 10 sheets in PDB entry 9VIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
49 52anti-parallel
Strand 3
B
55 56anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
169 172parallel
Strand 3
B
140 144parallel
Strand 4
B
360 366parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 225first strand
Strand 2
B
256 260parallel
Strand 3
B
295 297parallel
Strand 4
B
330 331parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
508 509first strand
Strand 2
B
515 516anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 580first strand
Strand 2
B
745 751anti-parallel
Strand 3
B
628 633anti-parallel
Strand 4
B
589 594parallel
Strand 5
B
655 659parallel
Strand 6
B
665 669anti-parallel
Strand 7
B
679 681anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 202first strand
Strand 2
C
169 172parallel
Strand 3
C
140 144parallel
Strand 4
C
360 366parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
C
256 260parallel
Strand 3
C
295 297parallel
Strand 4
C
330 331parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
508 509first strand
Strand 2
C
515 516anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
574 580first strand
Strand 2
C
745 750anti-parallel
Strand 3
C
628 633anti-parallel
Strand 4
C
589 594parallel
Strand 5
C
655 659parallel
Strand 6
C
665 669anti-parallel
Strand 7
C
679 681anti-parallel
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