Analysis of interatomic Contacts of Structural Units in PDB entry:
9VIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VIN entry

There are 31 chains in PDB entry 9VIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ALA 199THR 305
F
 ALA 199THR 305
N
 ALA 199THR 305
V
 ALA 199THR 305
W
 ALA 199THR 305
i
 LYS 571GLN 670
j
 LYS 571GLN 670
k
 LYS 571GLN 670
l
 LYS 571GLN 670
m
 LYS 571GLN 670
n
 LYS 571GLN 670
o
 LYS 571GLN 670
p
 LYS 571GLN 670
q
 LYS 571GLN 670
r
 LYS 571GLN 670
s
 LYS 571GLN 670
t
 LYS 571GLN 670
A
 ASP 355LEU 441
B
 ASP 355LEU 441
C
 ASP 355LEU 441
D
 ASP 355LEU 441
G
 ASP 355LEU 441
a
 ASP 355LEU 441
b
 ASP 355LEU 441
c
 ASP 355LEU 441
d
 ASP 355LEU 441
e
 ASP 355LEU 441
f
 ASP 355LEU 441
g
 ASP 355LEU 441
h
 ASP 355LEU 441
u
 LYS 571GLN 670
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are201 helices in PDB entry 9VIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
215 224Right-handed alpha
Helix 2
AA2
E
229 238Right-handed alpha
Helix 3
AA3
E
247 256Right-handed alpha
Helix 4
AA4
E
260 277Right-handed alpha
Helix 5
AA5
E
281 290Right-handed alpha
Helix 6
AA6
E
294 303Right-handed alpha
Helix 7
AA7
F
215 225Right-handed alpha
Helix 8
AA8
F
226 228Right-handed 310
Helix 9
AA9
F
229 241Right-handed alpha
Helix 10
AB1
F
245 256Right-handed alpha
Helix 11
AB2
F
260 277Right-handed alpha
Helix 12
AB3
F
281 292Right-handed alpha
Helix 13
AB4
F
294 303Right-handed alpha
Helix 14
AB5
N
215 227Right-handed alpha
Helix 15
AB6
N
228 241Right-handed alpha
Helix 16
AB7
N
247 256Right-handed alpha
Helix 17
AB8
N
260 277Right-handed alpha
Helix 18
AB9
N
278 280Right-handed 310
Helix 19
AC1
N
281 292Right-handed alpha
Helix 20
AC2
N
294 303Right-handed alpha
Helix 21
AC3
V
215 226Right-handed alpha
Helix 22
AC4
V
229 239Right-handed alpha
Helix 23
AC5
V
241 245Right-handed 310
Helix 24
AC6
V
247 256Right-handed alpha
Helix 25
AC7
V
260 277Right-handed alpha
Helix 26
AC8
V
281 292Right-handed alpha
Helix 27
AC9
V
294 303Right-handed alpha
Helix 28
AD1
W
215 226Right-handed alpha
Helix 29
AD2
W
229 241Right-handed alpha
Helix 30
AD3
W
247 256Right-handed alpha
Helix 31
AD4
W
260 277Right-handed alpha
Helix 32
AD5
W
278 280Right-handed 310
Helix 33
AD6
W
281 292Right-handed alpha
Helix 34
AD7
W
294 302Right-handed alpha
Helix 35
AD8
i
587 594Right-handed alpha
Helix 36
AD9
i
597 605Right-handed alpha
Helix 37
AE1
i
608 619Right-handed alpha
Helix 38
AE2
i
623 644Right-handed alpha
Helix 39
AE3
i
645 656Right-handed alpha
Helix 40
AE4
i
658 669Right-handed alpha
Helix 41
AE5
j
583 594Right-handed alpha
Helix 42
AE6
j
598 605Right-handed alpha
Helix 43
AE7
j
608 619Right-handed alpha
Helix 44
AE8
j
623 644Right-handed alpha
Helix 45
AE9
j
645 657Right-handed alpha
Helix 46
AF1
j
658 668Right-handed alpha
Helix 47
AF2
k
583 594Right-handed alpha
Helix 48
AF3
k
597 605Right-handed alpha
Helix 49
AF4
k
608 619Right-handed alpha
Helix 50
AF5
k
623 644Right-handed alpha
Helix 51
AF6
k
645 656Right-handed alpha
Helix 52
AF7
k
658 670Right-handed alpha
Helix 53
AF8
l
583 594Right-handed alpha
Helix 54
AF9
l
597 605Right-handed alpha
Helix 55
AG1
l
608 619Right-handed alpha
Helix 56
AG2
l
623 640Right-handed alpha
Helix 57
AG3
l
645 656Right-handed alpha
Helix 58
AG4
l
658 670Right-handed alpha
Helix 59
AG5
m
583 594Right-handed alpha
Helix 60
AG6
m
597 605Right-handed alpha
Helix 61
AG7
m
608 619Right-handed alpha
Helix 62
AG8
m
623 644Right-handed alpha
Helix 63
AG9
m
645 656Right-handed alpha
Helix 64
AH1
m
658 669Right-handed alpha
Helix 65
AH2
n
583 594Right-handed alpha
Helix 66
AH3
n
597 605Right-handed alpha
Helix 67
AH4
n
608 619Right-handed alpha
Helix 68
AH5
n
623 644Right-handed alpha
Helix 69
AH6
n
645 656Right-handed alpha
Helix 70
AH7
n
658 669Right-handed alpha
Helix 71
AH8
o
583 594Right-handed alpha
Helix 72
AH9
o
597 605Right-handed alpha
Helix 73
AI1
o
608 619Right-handed alpha
Helix 74
AI2
o
623 644Right-handed alpha
Helix 75
AI3
o
645 656Right-handed alpha
Helix 76
AI4
o
658 669Right-handed alpha
Helix 77
AI5
p
587 594Right-handed alpha
Helix 78
AI6
p
598 605Right-handed alpha
Helix 79
AI7
p
608 619Right-handed alpha
Helix 80
AI8
p
623 644Right-handed alpha
Helix 81
AI9
p
645 656Right-handed alpha
Helix 82
AJ1
p
658 669Right-handed alpha
Helix 83
AJ2
q
583 593Right-handed alpha
Helix 84
AJ3
q
598 605Right-handed alpha
Helix 85
AJ4
q
608 619Right-handed alpha
Helix 86
AJ5
q
623 644Right-handed alpha
Helix 87
AJ6
q
645 656Right-handed alpha
Helix 88
AJ7
q
658 669Right-handed alpha
Helix 89
AJ8
r
583 593Right-handed alpha
Helix 90
AJ9
r
598 605Right-handed alpha
Helix 91
AK1
r
608 619Right-handed alpha
Helix 92
AK2
r
623 644Right-handed alpha
Helix 93
AK3
r
645 656Right-handed alpha
Helix 94
AK4
r
658 670Right-handed alpha
Helix 95
AK5
s
583 593Right-handed alpha
Helix 96
AK6
s
597 605Right-handed alpha
Helix 97
AK7
s
608 619Right-handed alpha
Helix 98
AK8
s
623 644Right-handed alpha
Helix 99
AK9
s
645 656Right-handed alpha
Helix 100
AL1
s
658 670Right-handed alpha
Helix 101
AL2
t
583 594Right-handed alpha
Helix 102
AL3
t
597 605Right-handed alpha
Helix 103
AL4
t
608 619Right-handed alpha
Helix 104
AL5
t
623 644Right-handed alpha
Helix 105
AL6
t
645 656Right-handed alpha
Helix 106
AL7
t
658 670Right-handed alpha
Helix 107
AL8
A
356 365Right-handed alpha
Helix 108
AL9
A
367 377Right-handed alpha
Helix 109
AM1
A
383 390Right-handed alpha
Helix 110
AM2
A
395 411Right-handed alpha
Helix 111
AM3
A
412 416Right-handed 310
Helix 112
AM4
A
417 427Right-handed alpha
Helix 113
AM5
A
430 441Right-handed alpha
Helix 114
AM6
B
356 366Right-handed alpha
Helix 115
AM7
B
367 377Right-handed alpha
Helix 116
AM8
B
381 392Right-handed alpha
Helix 117
AM9
B
396 411Right-handed alpha
Helix 118
AN1
B
412 416Right-handed 310
Helix 119
AN2
B
417 428Right-handed alpha
Helix 120
AN3
B
430 441Right-handed alpha
Helix 121
AN4
C
356 366Right-handed alpha
Helix 122
AN5
C
367 377Right-handed alpha
Helix 123
AN6
C
381 392Right-handed alpha
Helix 124
AN7
C
395 411Right-handed alpha
Helix 125
AN8
C
417 429Right-handed alpha
Helix 126
AN9
C
430 441Right-handed alpha
Helix 127
AO1
D
356 365Right-handed alpha
Helix 128
AO2
D
367 377Right-handed alpha
Helix 129
AO3
D
381 392Right-handed alpha
Helix 130
AO4
D
395 411Right-handed alpha
Helix 131
AO5
D
412 416Right-handed 310
Helix 132
AO6
D
417 428Right-handed alpha
Helix 133
AO7
D
430 441Right-handed alpha
Helix 134
AO8
G
356 366Right-handed alpha
Helix 135
AO9
G
367 378Right-handed alpha
Helix 136
AP1
G
381 392Right-handed alpha
Helix 137
AP2
G
395 410Right-handed alpha
Helix 138
AP3
G
417 429Right-handed alpha
Helix 139
AP4
G
430 441Right-handed alpha
Helix 140
AP5
a
356 365Right-handed alpha
Helix 141
AP6
a
367 378Right-handed alpha
Helix 142
AP7
a
381 392Right-handed alpha
Helix 143
AP8
a
395 411Right-handed alpha
Helix 144
AP9
a
413 416Right-handed 310
Helix 145
AQ1
a
417 429Right-handed alpha
Helix 146
AQ2
a
430 441Right-handed alpha
Helix 147
AQ3
b
356 365Right-handed alpha
Helix 148
AQ4
b
367 377Right-handed alpha
Helix 149
AQ5
b
381 392Right-handed alpha
Helix 150
AQ6
b
395 411Right-handed alpha
Helix 151
AQ7
b
412 416Right-handed 310
Helix 152
AQ8
b
417 428Right-handed alpha
Helix 153
AQ9
b
430 441Right-handed alpha
Helix 154
AR1
c
356 364Right-handed alpha
Helix 155
AR2
c
367 379Right-handed alpha
Helix 156
AR3
c
381 392Right-handed alpha
Helix 157
AR4
c
395 411Right-handed alpha
Helix 158
AR5
c
412 416Right-handed 310
Helix 159
AR6
c
417 427Right-handed alpha
Helix 160
AR7
c
430 441Right-handed alpha
Helix 161
AR8
d
356 366Right-handed alpha
Helix 162
AR9
d
367 377Right-handed alpha
Helix 163
AS1
d
381 392Right-handed alpha
Helix 164
AS2
d
395 411Right-handed alpha
Helix 165
AS3
d
412 416Right-handed 310
Helix 166
AS4
d
417 429Right-handed alpha
Helix 167
AS5
d
430 441Right-handed alpha
Helix 168
AS6
e
356 365Right-handed alpha
Helix 169
AS7
e
367 377Right-handed alpha
Helix 170
AS8
e
381 392Right-handed alpha
Helix 171
AS9
e
395 411Right-handed alpha
Helix 172
AT1
e
412 416Right-handed 310
Helix 173
AT2
e
417 428Right-handed alpha
Helix 174
AT3
e
430 441Right-handed alpha
Helix 175
AT4
f
356 366Right-handed alpha
Helix 176
AT5
f
367 376Right-handed alpha
Helix 177
AT6
f
381 392Right-handed alpha
Helix 178
AT7
f
395 411Right-handed alpha
Helix 179
AT8
f
412 416Right-handed 310
Helix 180
AT9
f
417 428Right-handed alpha
Helix 181
AU1
f
430 441Right-handed alpha
Helix 182
AU2
g
356 365Right-handed alpha
Helix 183
AU3
g
367 378Right-handed alpha
Helix 184
AU4
g
381 392Right-handed alpha
Helix 185
AU5
g
395 411Right-handed alpha
Helix 186
AU6
g
413 416Right-handed 310
Helix 187
AU7
g
417 429Right-handed alpha
Helix 188
AU8
g
430 441Right-handed alpha
Helix 189
AU9
h
356 366Right-handed alpha
Helix 190
AV1
h
367 378Right-handed alpha
Helix 191
AV2
h
381 392Right-handed alpha
Helix 192
AV3
h
395 411Right-handed alpha
Helix 193
AV4
h
412 416Right-handed 310
Helix 194
AV5
h
417 429Right-handed alpha
Helix 195
AV6
h
430 441Right-handed alpha
Helix 196
AV7
u
583 594Right-handed alpha
Helix 197
AV8
u
597 605Right-handed alpha
Helix 198
AV9
u
608 619Right-handed alpha
Helix 199
AW1
u
623 644Right-handed alpha
Helix 200
AW2
u
645 656Right-handed alpha
Helix 201
AW3
u
658 669Right-handed alpha
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There are 5 sheets in PDB entry 9VIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
201 204first strand
Strand 2
E
207 210anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
201 204first strand
Strand 2
F
207 210anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
201 204first strand
Strand 2
N
207 210anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
201 203first strand
Strand 2
V
208 210anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
201 203first strand
Strand 2
W
208 210anti-parallel
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