Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VJ4 entry

There are 2 chains in PDB entry 9VJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 43ASP 322
B
 PHE 15GLU 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9VJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 62Right-handed alpha
Helix 2
AA2
A
65 82Right-handed alpha
Helix 3
AA3
A
86 92Right-handed alpha
Helix 4
AA4
A
92 107Right-handed alpha
Helix 5
AA5
A
120 129Right-handed alpha
Helix 6
AA6
A
142 156Right-handed alpha
Helix 7
AA7
A
160 171Right-handed alpha
Helix 8
AA8
A
175 198Right-handed alpha
Helix 9
AA9
A
202 209Right-handed alpha
Helix 10
AB1
A
224 230Right-handed alpha
Helix 11
AB2
A
235 243Right-handed alpha
Helix 12
AB3
A
253 268Right-handed alpha
Helix 13
AB4
A
274 291Right-handed alpha
Helix 14
AB5
A
295 303Right-handed alpha
Helix 15
AB6
A
304 315Right-handed alpha
Helix 16
AB7
B
17 42Right-handed alpha
Helix 17
AB8
B
50 73Right-handed alpha
Helix 18
AB9
B
78 110Right-handed alpha
Helix 19
AC1
B
145 181Right-handed alpha
Helix 20
AC2
B
200 221Right-handed alpha
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There are no sheets in PDB entry 9VJ4
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il