Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VJA entry

There are 11 chains in PDB entry 9VJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	TRP 3	ILE 288
L	ARG 4	ILE 288
N	T -35	A 9
T	T -9	A 35
g	C 7	U 34
t	A 22	C 83
A	MET 1	ALA 219
B	MET 1	ALA 219
C	MET 1	ALA 219
D	MET 1	ALA 219
S	LYS 2	ASP 1337

There are114 helices in PDB entry 9VJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	51	59	Right-handed alpha
Helix 2	AA2	K	88	94	Right-handed alpha
Helix 3	AA3	K	97	121	Right-handed alpha
Helix 4	AA4	K	126	135	Right-handed alpha
Helix 5	AA5	K	136	139	Right-handed 310
Helix 6	AA6	K	142	145	Right-handed 310
Helix 7	AA7	K	146	160	Right-handed alpha
Helix 8	AA8	K	170	195	Right-handed alpha
Helix 9	AA9	K	211	216	Right-handed alpha
Helix 10	AB1	K	218	220	Right-handed 310
Helix 11	AB2	K	221	232	Right-handed alpha
Helix 12	AB3	K	236	244	Right-handed alpha
Helix 13	AB4	K	245	249	Right-handed 310
Helix 14	AB5	K	260	276	Right-handed alpha
Helix 15	AB6	L	51	60	Right-handed alpha
Helix 16	AB7	L	88	94	Right-handed alpha
Helix 17	AB8	L	97	122	Right-handed alpha
Helix 18	AB9	L	125	138	Right-handed alpha
Helix 19	AC1	L	146	160	Right-handed alpha
Helix 20	AC2	L	172	195	Right-handed alpha
Helix 21	AC3	L	211	216	Right-handed alpha
Helix 22	AC4	L	217	220	Right-handed 310
Helix 23	AC5	L	221	232	Right-handed alpha
Helix 24	AC6	L	236	245	Right-handed alpha
Helix 25	AC7	L	261	276	Right-handed alpha
Helix 26	AC8	A	24	37	Right-handed alpha
Helix 27	AC9	A	55	57	Right-handed 310
Helix 28	AD1	A	64	68	Right-handed 310
Helix 29	AD2	A	72	90	Right-handed alpha
Helix 30	AD3	A	90	114	Right-handed alpha
Helix 31	AD4	A	125	134	Right-handed alpha
Helix 32	AD5	A	143	158	Right-handed alpha
Helix 33	AD6	A	169	173	Right-handed 310
Helix 34	AD7	A	174	189	Right-handed alpha
Helix 35	AD8	B	24	37	Right-handed alpha
Helix 36	AD9	B	64	68	Right-handed 310
Helix 37	AE1	B	72	90	Right-handed alpha
Helix 38	AE2	B	90	115	Right-handed alpha
Helix 39	AE3	B	125	134	Right-handed alpha
Helix 40	AE4	B	143	158	Right-handed alpha
Helix 41	AE5	B	174	189	Right-handed alpha
Helix 42	AE6	C	24	37	Right-handed alpha
Helix 43	AE7	C	64	68	Right-handed 310
Helix 44	AE8	C	72	90	Right-handed alpha
Helix 45	AE9	C	90	113	Right-handed alpha
Helix 46	AF1	C	125	133	Right-handed alpha
Helix 47	AF2	C	143	158	Right-handed alpha
Helix 48	AF3	C	169	173	Right-handed 310
Helix 49	AF4	C	174	189	Right-handed alpha
Helix 50	AF5	D	24	36	Right-handed alpha
Helix 51	AF6	D	64	68	Right-handed 310
Helix 52	AF7	D	72	90	Right-handed alpha
Helix 53	AF8	D	90	115	Right-handed alpha
Helix 54	AF9	D	125	134	Right-handed alpha
Helix 55	AG1	D	143	158	Right-handed alpha
Helix 56	AG2	D	174	189	Right-handed alpha
Helix 57	AG3	S	59	86	Right-handed alpha
Helix 58	AG4	S	87	92	Right-handed alpha
Helix 59	AG5	S	97	103	Right-handed alpha
Helix 60	AG6	S	121	132	Right-handed alpha
Helix 61	AG7	S	134	145	Right-handed alpha
Helix 62	AG8	S	150	164	Right-handed alpha
Helix 63	AG9	S	182	194	Right-handed alpha
Helix 64	AH1	S	223	235	Right-handed alpha
Helix 65	AH2	S	241	253	Right-handed alpha
Helix 66	AH3	S	276	289	Right-handed alpha
Helix 67	AH4	S	292	312	Right-handed alpha
Helix 68	AH5	S	313	315	Right-handed 310
Helix 69	AH6	S	321	349	Right-handed alpha
Helix 70	AH7	S	350	352	Right-handed 310
Helix 71	AH8	S	353	358	Right-handed alpha
Helix 72	AH9	S	364	371	Right-handed alpha
Helix 73	AI1	S	376	388	Right-handed alpha
Helix 74	AI2	S	394	403	Right-handed alpha
Helix 75	AI3	S	419	435	Right-handed alpha
Helix 76	AI4	S	438	444	Right-handed alpha
Helix 77	AI5	S	444	454	Right-handed alpha
Helix 78	AI6	S	492	504	Right-handed alpha
Helix 79	AI7	S	521	535	Right-handed alpha
Helix 80	AI8	S	549	564	Right-handed alpha
Helix 81	AI9	S	568	581	Right-handed alpha
Helix 82	AJ1	S	599	608	Right-handed alpha
Helix 83	AJ2	S	611	617	Right-handed alpha
Helix 84	AJ3	S	620	634	Right-handed alpha
Helix 85	AJ4	S	636	646	Right-handed alpha
Helix 86	AJ5	S	652	662	Right-handed alpha
Helix 87	AJ6	S	672	677	Right-handed alpha
Helix 88	AJ7	S	686	693	Right-handed alpha
Helix 89	AJ8	S	704	710	Right-handed alpha
Helix 90	AJ9	S	715	725	Right-handed alpha
Helix 91	AK1	S	731	738	Right-handed alpha
Helix 92	AK2	S	742	764	Right-handed alpha
Helix 93	AK3	S	791	803	Right-handed alpha
Helix 94	AK4	S	815	818	Right-handed 310
Helix 95	AK5	S	819	828	Right-handed alpha
Helix 96	AK6	S	862	864	Right-handed 310
Helix 97	AK7	S	883	890	Right-handed alpha
Helix 98	AK8	S	891	900	Right-handed alpha
Helix 99	AK9	S	904	917	Right-handed alpha
Helix 100	AL1	S	920	933	Right-handed alpha
Helix 101	AL2	S	936	951	Right-handed alpha
Helix 102	AL3	S	967	975	Right-handed alpha
Helix 103	AL4	S	987	1007	Right-handed alpha
Helix 104	AL5	S	1010	1014	Right-handed 310
Helix 105	AL6	S	1023	1035	Right-handed alpha
Helix 106	AL7	S	1061	1072	Right-handed alpha
Helix 107	AL8	S	1150	1157	Right-handed alpha
Helix 108	AL9	S	1157	1164	Right-handed alpha
Helix 109	AM1	S	1207	1222	Right-handed alpha
Helix 110	AM2	S	1227	1235	Right-handed alpha
Helix 111	AM3	S	1236	1253	Right-handed alpha
Helix 112	AM4	S	1256	1269	Right-handed alpha
Helix 113	AM5	S	1274	1289	Right-handed alpha
Helix 114	AM6	S	1312	1317	Right-handed 310

There are 26 sheets in PDB entry 9VJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	37	41	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	33	first strand
Strand 2	K	20	24	anti-parallel
Strand 3	K	13	17	anti-parallel
Strand 4	K	48	50	parallel
Strand 5	L	47	50	anti-parallel
Strand 6	L	12	16	parallel
Strand 7	L	20	25	anti-parallel
Strand 8	L	28	33	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	66	67	first strand
Strand 2	K	73	77	anti-parallel
Strand 3	L	77	79	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	252	253	first strand
Strand 2	K	258	259	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	39	41	first strand
Strand 2	L	63	65	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	251	254	first strand
Strand 2	L	257	260	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	2	4	anti-parallel
Strand 3	A	45	47	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	163	167	parallel
Strand 3	A	191	196	parallel
Strand 4	A	17	22	parallel
Strand 5	A	204	208	parallel
Strand 6	A	214	218	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	C	136	137	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	2	4	anti-parallel
Strand 3	B	45	47	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	163	167	parallel
Strand 3	B	192	196	parallel
Strand 4	B	17	22	parallel
Strand 5	B	204	208	parallel
Strand 6	B	214	218	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	D	119	120	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	2	4	anti-parallel
Strand 3	C	45	47	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	192	196	parallel
Strand 3	C	163	167	parallel
Strand 4	C	59	62	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	208	first strand
Strand 2	C	214	218	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	2	4	anti-parallel
Strand 3	D	45	47	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	162	167	parallel
Strand 3	D	192	196	parallel
Strand 4	D	17	22	parallel
Strand 5	D	203	208	parallel
Strand 6	D	214	219	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	26	27	first strand
Strand 2	S	15	22	anti-parallel
Strand 3	S	5	11	anti-parallel
Strand 4	S	769	774	parallel
Strand 5	S	960	963	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	26	27	first strand
Strand 2	S	15	22	anti-parallel
Strand 3	S	48	52	anti-parallel
Strand 4	S	1077	1080	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	46	first strand
Strand 2	S	29	36	anti-parallel
Strand 3	S	1330	1334	parallel
Strand 4	S	1319	1323	anti-parallel
Strand 5	S	1180	1183	anti-parallel
Strand 6	S	1189	1192	anti-parallel
Strand 7	S	1198	1200	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	256	257	first strand
Strand 2	S	269	270	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	516	518	first strand
Strand 2	S	667	671	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	545	546	first strand
Strand 2	S	537	540	anti-parallel
Strand 3	S	584	588	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	848	851	first strand
Strand 2	S	866	869	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1139	1147	first strand
Strand 2	S	1123	1132	anti-parallel
Strand 3	S	1170	1176	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1297	1298	first strand
Strand 2	S	1303	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJA