Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VJB entry

There are 9 chains in PDB entry 9VJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 219
B	MET 1	ALA 219
C	MET 1	ALA 219
D	MET 1	ALA 219
I	MET 1	ILE 288
J	MET 1	GLY 287
X	T 1	T 25
Y	A 1	A 25
N	GLN 81	GLU 108

There are 52 helices in PDB entry 9VJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	37	Right-handed alpha
Helix 2	AA2	A	72	89	Right-handed alpha
Helix 3	AA3	A	90	113	Right-handed alpha
Helix 4	AA4	A	125	133	Right-handed alpha
Helix 5	AA5	A	143	158	Right-handed alpha
Helix 6	AA6	A	168	173	Right-handed alpha
Helix 7	AA7	A	174	189	Right-handed alpha
Helix 8	AA8	B	24	36	Right-handed alpha
Helix 9	AA9	B	72	89	Right-handed alpha
Helix 10	AB1	B	91	114	Right-handed alpha
Helix 11	AB2	B	125	134	Right-handed alpha
Helix 12	AB3	B	142	158	Right-handed alpha
Helix 13	AB4	B	174	189	Right-handed alpha
Helix 14	AB5	C	24	37	Right-handed alpha
Helix 15	AB6	C	72	90	Right-handed alpha
Helix 16	AB7	C	90	114	Right-handed alpha
Helix 17	AB8	C	125	134	Right-handed alpha
Helix 18	AB9	C	143	158	Right-handed alpha
Helix 19	AC1	C	169	172	Right-handed 310
Helix 20	AC2	C	174	189	Right-handed alpha
Helix 21	AC3	D	24	37	Right-handed alpha
Helix 22	AC4	D	72	90	Right-handed alpha
Helix 23	AC5	D	90	115	Right-handed alpha
Helix 24	AC6	D	125	133	Right-handed alpha
Helix 25	AC7	D	143	158	Right-handed alpha
Helix 26	AC8	D	174	189	Right-handed alpha
Helix 27	AC9	I	51	60	Right-handed alpha
Helix 28	AD1	I	84	88	Right-handed 310
Helix 29	AD2	I	89	94	Right-handed alpha
Helix 30	AD3	I	98	123	Right-handed alpha
Helix 31	AD4	I	125	138	Right-handed alpha
Helix 32	AD5	I	146	161	Right-handed alpha
Helix 33	AD6	I	170	194	Right-handed alpha
Helix 34	AD7	I	211	217	Right-handed alpha
Helix 35	AD8	I	218	221	Right-handed 310
Helix 36	AD9	I	222	230	Right-handed alpha
Helix 37	AE1	I	231	233	Right-handed 310
Helix 38	AE2	I	236	245	Right-handed alpha
Helix 39	AE3	I	260	277	Right-handed alpha
Helix 40	AE4	J	51	60	Right-handed alpha
Helix 41	AE5	J	86	95	Right-handed alpha
Helix 42	AE6	J	97	122	Right-handed alpha
Helix 43	AE7	J	125	138	Right-handed alpha
Helix 44	AE8	J	146	160	Right-handed alpha
Helix 45	AE9	J	170	194	Right-handed alpha
Helix 46	AF1	J	211	217	Right-handed alpha
Helix 47	AF2	J	218	220	Right-handed 310
Helix 48	AF3	J	221	232	Right-handed alpha
Helix 49	AF4	J	236	245	Right-handed alpha
Helix 50	AF5	J	246	249	Right-handed 310
Helix 51	AF6	J	260	277	Right-handed alpha
Helix 52	AF7	N	81	85	Right-handed 310

There are 16 sheets in PDB entry 9VJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	12	13	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	163	167	parallel
Strand 3	A	192	196	parallel
Strand 4	A	17	22	parallel
Strand 5	A	205	208	parallel
Strand 6	A	214	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	D	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	12	13	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	164	167	parallel
Strand 3	B	192	196	parallel
Strand 4	B	19	22	parallel
Strand 5	B	205	208	parallel
Strand 6	B	214	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	C	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	C	119	120	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	12	13	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	163	167	parallel
Strand 3	C	191	196	parallel
Strand 4	C	17	22	parallel
Strand 5	C	204	208	parallel
Strand 6	C	214	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	52	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	2	4	anti-parallel
Strand 3	D	45	48	anti-parallel
Strand 4	D	52	53	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	163	167	parallel
Strand 3	D	192	196	parallel
Strand 4	D	17	22	parallel
Strand 5	D	204	208	parallel
Strand 6	D	214	218	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	37	41	parallel
Strand 3	I	63	67	parallel
Strand 4	I	73	79	anti-parallel
Strand 5	J	73	79	anti-parallel
Strand 6	J	63	67	anti-parallel
Strand 7	J	37	42	parallel
Strand 8	J	4	8	parallel
Strand 9	N	104	106	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	33	first strand
Strand 2	I	20	25	anti-parallel
Strand 3	I	12	16	anti-parallel
Strand 4	I	48	50	parallel
Strand 5	J	48	50	anti-parallel
Strand 6	J	13	16	parallel
Strand 7	J	20	24	anti-parallel
Strand 8	J	29	33	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	252	254	first strand
Strand 2	I	257	259	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	252	253	first strand
Strand 2	J	258	259	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJB