Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VJI entry

There are 2 chains in PDB entry 9VJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 19GLY 844
B
 ILE 19GLY 844
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9VJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 38Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
86 99Right-handed alpha
Helix 4
AA4
A
112 126Right-handed alpha
Helix 5
AA5
A
175 182Right-handed alpha
Helix 6
AA6
A
183 185Right-handed 310
Helix 7
AA7
A
190 205Right-handed alpha
Helix 8
AA8
A
216 227Right-handed alpha
Helix 9
AA9
A
228 230Right-handed 310
Helix 10
AB1
A
256 264Right-handed alpha
Helix 11
AB2
A
285 296Right-handed alpha
Helix 12
AB3
A
306 319Right-handed alpha
Helix 13
AB4
A
335 341Right-handed alpha
Helix 14
AB5
A
348 353Right-handed alpha
Helix 15
AB6
A
377 386Right-handed alpha
Helix 16
AB7
A
412 422Right-handed alpha
Helix 17
AB8
A
459 475Right-handed alpha
Helix 18
AB9
A
477 491Right-handed alpha
Helix 19
AC1
A
506 532Right-handed alpha
Helix 20
AC2
A
539 546Right-handed alpha
Helix 21
AC3
A
547 557Right-handed alpha
Helix 22
AC4
A
563 575Right-handed alpha
Helix 23
AC5
A
576 595Right-handed alpha
Helix 24
AC6
A
595 601Right-handed alpha
Helix 25
AC7
A
601 613Right-handed alpha
Helix 26
AC8
A
637 654Right-handed alpha
Helix 27
AC9
A
668 677Right-handed alpha
Helix 28
AD1
A
679 693Right-handed alpha
Helix 29
AD2
A
702 714Right-handed alpha
Helix 30
AD3
A
725 739Right-handed alpha
Helix 31
AD4
A
806 812Right-handed 310
Helix 32
AD5
A
822 834Right-handed alpha
Helix 33
AD6
B
20 38Right-handed alpha
Helix 34
AD7
B
41 50Right-handed alpha
Helix 35
AD8
B
86 99Right-handed alpha
Helix 36
AD9
B
112 126Right-handed alpha
Helix 37
AE1
B
175 182Right-handed alpha
Helix 38
AE2
B
190 205Right-handed alpha
Helix 39
AE3
B
216 227Right-handed alpha
Helix 40
AE4
B
228 230Right-handed 310
Helix 41
AE5
B
256 264Right-handed alpha
Helix 42
AE6
B
285 296Right-handed alpha
Helix 43
AE7
B
306 319Right-handed alpha
Helix 44
AE8
B
335 341Right-handed alpha
Helix 45
AE9
B
348 353Right-handed alpha
Helix 46
AF1
B
377 386Right-handed alpha
Helix 47
AF2
B
412 422Right-handed alpha
Helix 48
AF3
B
459 464Right-handed alpha
Helix 49
AF4
B
464 475Right-handed alpha
Helix 50
AF5
B
477 491Right-handed alpha
Helix 51
AF6
B
506 532Right-handed alpha
Helix 52
AF7
B
539 546Right-handed alpha
Helix 53
AF8
B
547 557Right-handed alpha
Helix 54
AF9
B
563 575Right-handed alpha
Helix 55
AG1
B
576 595Right-handed alpha
Helix 56
AG2
B
595 601Right-handed alpha
Helix 57
AG3
B
601 613Right-handed alpha
Helix 58
AG4
B
637 654Right-handed alpha
Helix 59
AG5
B
668 677Right-handed alpha
Helix 60
AG6
B
679 693Right-handed alpha
Helix 61
AG7
B
702 714Right-handed alpha
Helix 62
AG8
B
725 739Right-handed alpha
Helix 63
AG9
B
806 812Right-handed 310
Helix 64
AH1
B
822 834Right-handed alpha
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There are 10 sheets in PDB entry 9VJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
232 237parallel
Strand 3
A
76 80parallel
Strand 4
A
207 212parallel
Strand 5
A
170 174parallel
Strand 6
A
106 109parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
344 347parallel
Strand 3
A
300 304parallel
Strand 4
A
364 369parallel
Strand 5
A
395 400parallel
Strand 6
A
248 251parallel
Strand 7
A
496 497parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 620first strand
Strand 2
A
626 631anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 657first strand
Strand 2
A
662 663anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 745first strand
Strand 2
A
802 803anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
232 237parallel
Strand 3
B
76 80parallel
Strand 4
B
207 212parallel
Strand 5
B
170 174parallel
Strand 6
B
106 110parallel
Strand 7
B
152 153parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
344 347parallel
Strand 3
B
300 304parallel
Strand 4
B
364 369parallel
Strand 5
B
395 400parallel
Strand 6
B
248 251parallel
Strand 7
B
496 497parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 620first strand
Strand 2
B
626 631anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 657first strand
Strand 2
B
662 663anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
744 745first strand
Strand 2
B
802 803anti-parallel
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