Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VJJ entry

There are 6 chains in PDB entry 9VJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 37	SER 390
B	ASP 37	SER 390
H	GLN 1	SER 122
I	VAL 2	SER 122
L	ASP 1	ILE 107
M	ASP 1	ILE 107

There are 29 helices in PDB entry 9VJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	57	Right-handed alpha
Helix 2	AA2	A	74	86	Right-handed alpha
Helix 3	AA3	A	100	104	Right-handed 310
Helix 4	AA4	A	118	122	Right-handed 310
Helix 5	AA5	A	137	144	Right-handed alpha
Helix 6	AA6	A	200	211	Right-handed alpha
Helix 7	AA7	A	264	269	Right-handed alpha
Helix 8	AA8	A	302	307	Right-handed alpha
Helix 9	AA9	A	343	347	Right-handed alpha
Helix 10	AB1	B	38	57	Right-handed alpha
Helix 11	AB2	B	74	86	Right-handed alpha
Helix 12	AB3	B	100	104	Right-handed 310
Helix 13	AB4	B	137	144	Right-handed alpha
Helix 14	AB5	B	146	148	Right-handed 310
Helix 15	AB6	B	200	211	Right-handed alpha
Helix 16	AB7	B	264	268	Right-handed 310
Helix 17	AB8	B	281	289	Right-handed alpha
Helix 18	AB9	B	302	307	Right-handed alpha
Helix 19	AC1	B	342	347	Right-handed alpha
Helix 20	AC2	H	28	32	Right-handed 310
Helix 21	AC3	H	73	75	Right-handed 310
Helix 22	AC4	H	86	90	Right-handed 310
Helix 23	AC5	H	104	107	Right-handed 310
Helix 24	AC6	I	28	32	Right-handed 310
Helix 25	AC7	I	86	90	Right-handed 310
Helix 26	AC8	I	104	107	Right-handed 310
Helix 27	AC9	L	79	83	Right-handed 310
Helix 28	AD1	L	93	95	Right-handed 310
Helix 29	AD2	M	93	97	Right-handed 310

There are 20 sheets in PDB entry 9VJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	199	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	106	112	anti-parallel
Strand 5	B	373	384	anti-parallel
Strand 6	B	361	370	anti-parallel
Strand 7	B	311	313	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	136	first strand
Strand 2	A	214	221	anti-parallel
Strand 3	A	166	174	anti-parallel
Strand 4	A	178	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	321	322	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	316	317	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	355	370	anti-parallel
Strand 3	A	373	390	anti-parallel
Strand 4	B	106	112	anti-parallel
Strand 5	B	257	262	anti-parallel
Strand 6	B	150	159	anti-parallel
Strand 7	B	194	199	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	136	first strand
Strand 2	B	214	221	anti-parallel
Strand 3	B	166	174	anti-parallel
Strand 4	B	178	187	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	321	323	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	301	first strand
Strand 2	B	316	318	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	387	389	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	109	112	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	116	120	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	116	120	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	109	112	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	97	99	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	103	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJJ