Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VJN entry

There are 4 chains in PDB entry 9VJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 115	LYS 1104
D	GLY 115	LYS 1104
C	GLY 115	LYS 1104
B	GLY 115	LYS 1104

There are168 helices in PDB entry 9VJN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	137	Right-handed alpha
Helix 2	AA2	A	158	176	Right-handed alpha
Helix 3	AA3	A	186	201	Right-handed alpha
Helix 4	AA4	A	276	287	Right-handed alpha
Helix 5	AA5	A	309	322	Right-handed alpha
Helix 6	AA6	A	333	343	Right-handed alpha
Helix 7	AA7	A	351	362	Right-handed alpha
Helix 8	AA8	A	362	369	Right-handed alpha
Helix 9	AA9	A	370	387	Right-handed alpha
Helix 10	AB1	A	403	419	Right-handed alpha
Helix 11	AB2	A	425	437	Right-handed alpha
Helix 12	AB3	A	438	445	Right-handed alpha
Helix 13	AB4	A	454	468	Right-handed alpha
Helix 14	AB5	A	470	480	Right-handed alpha
Helix 15	AB6	A	483	488	Right-handed alpha
Helix 16	AB7	A	489	500	Right-handed alpha
Helix 17	AB8	A	502	516	Right-handed alpha
Helix 18	AB9	A	518	533	Right-handed alpha
Helix 19	AC1	A	559	570	Right-handed alpha
Helix 20	AC2	A	573	584	Right-handed alpha
Helix 21	AC3	A	586	602	Right-handed alpha
Helix 22	AC4	A	607	636	Right-handed alpha
Helix 23	AC5	A	637	645	Right-handed alpha
Helix 24	AC6	A	655	663	Right-handed alpha
Helix 25	AC7	A	665	670	Right-handed alpha
Helix 26	AC8	A	671	684	Right-handed alpha
Helix 27	AC9	A	691	701	Right-handed alpha
Helix 28	AD1	A	703	708	Right-handed alpha
Helix 29	AD2	A	723	733	Right-handed alpha
Helix 30	AD3	A	733	758	Right-handed alpha
Helix 31	AD4	A	765	790	Right-handed alpha
Helix 32	AD5	A	791	795	Right-handed 310
Helix 33	AD6	A	796	818	Right-handed alpha
Helix 34	AD7	A	821	852	Right-handed alpha
Helix 35	AD8	A	856	890	Right-handed alpha
Helix 36	AD9	A	895	912	Right-handed alpha
Helix 37	AE1	A	955	984	Right-handed alpha
Helix 38	AE2	A	989	1008	Right-handed alpha
Helix 39	AE3	A	1012	1014	Right-handed 310
Helix 40	AE4	A	1015	1028	Right-handed alpha
Helix 41	AE5	A	1050	1070	Right-handed alpha
Helix 42	AE6	A	1080	1104	Right-handed alpha
Helix 43	AE7	D	125	137	Right-handed alpha
Helix 44	AE8	D	158	176	Right-handed alpha
Helix 45	AE9	D	187	202	Right-handed alpha
Helix 46	AF1	D	276	287	Right-handed alpha
Helix 47	AF2	D	309	322	Right-handed alpha
Helix 48	AF3	D	333	343	Right-handed alpha
Helix 49	AF4	D	351	362	Right-handed alpha
Helix 50	AF5	D	362	369	Right-handed alpha
Helix 51	AF6	D	370	387	Right-handed alpha
Helix 52	AF7	D	403	419	Right-handed alpha
Helix 53	AF8	D	425	437	Right-handed alpha
Helix 54	AF9	D	438	445	Right-handed alpha
Helix 55	AG1	D	454	468	Right-handed alpha
Helix 56	AG2	D	470	480	Right-handed alpha
Helix 57	AG3	D	483	488	Right-handed alpha
Helix 58	AG4	D	489	500	Right-handed alpha
Helix 59	AG5	D	502	516	Right-handed alpha
Helix 60	AG6	D	518	533	Right-handed alpha
Helix 61	AG7	D	559	570	Right-handed alpha
Helix 62	AG8	D	573	584	Right-handed alpha
Helix 63	AG9	D	586	602	Right-handed alpha
Helix 64	AH1	D	607	636	Right-handed alpha
Helix 65	AH2	D	637	645	Right-handed alpha
Helix 66	AH3	D	655	663	Right-handed alpha
Helix 67	AH4	D	665	670	Right-handed alpha
Helix 68	AH5	D	671	684	Right-handed alpha
Helix 69	AH6	D	691	701	Right-handed alpha
Helix 70	AH7	D	703	708	Right-handed alpha
Helix 71	AH8	D	723	733	Right-handed alpha
Helix 72	AH9	D	733	758	Right-handed alpha
Helix 73	AI1	D	765	790	Right-handed alpha
Helix 74	AI2	D	791	795	Right-handed 310
Helix 75	AI3	D	796	818	Right-handed alpha
Helix 76	AI4	D	821	852	Right-handed alpha
Helix 77	AI5	D	856	890	Right-handed alpha
Helix 78	AI6	D	895	912	Right-handed alpha
Helix 79	AI7	D	955	984	Right-handed alpha
Helix 80	AI8	D	989	1008	Right-handed alpha
Helix 81	AI9	D	1012	1014	Right-handed 310
Helix 82	AJ1	D	1015	1028	Right-handed alpha
Helix 83	AJ2	D	1050	1070	Right-handed alpha
Helix 84	AJ3	D	1080	1104	Right-handed alpha
Helix 85	AJ4	C	125	137	Right-handed alpha
Helix 86	AJ5	C	158	176	Right-handed alpha
Helix 87	AJ6	C	187	202	Right-handed alpha
Helix 88	AJ7	C	276	287	Right-handed alpha
Helix 89	AJ8	C	309	322	Right-handed alpha
Helix 90	AJ9	C	333	343	Right-handed alpha
Helix 91	AK1	C	351	362	Right-handed alpha
Helix 92	AK2	C	362	369	Right-handed alpha
Helix 93	AK3	C	370	387	Right-handed alpha
Helix 94	AK4	C	403	419	Right-handed alpha
Helix 95	AK5	C	425	437	Right-handed alpha
Helix 96	AK6	C	438	445	Right-handed alpha
Helix 97	AK7	C	454	468	Right-handed alpha
Helix 98	AK8	C	470	480	Right-handed alpha
Helix 99	AK9	C	483	488	Right-handed alpha
Helix 100	AL1	C	489	500	Right-handed alpha
Helix 101	AL2	C	502	516	Right-handed alpha
Helix 102	AL3	C	518	533	Right-handed alpha
Helix 103	AL4	C	559	570	Right-handed alpha
Helix 104	AL5	C	573	584	Right-handed alpha
Helix 105	AL6	C	586	602	Right-handed alpha
Helix 106	AL7	C	607	636	Right-handed alpha
Helix 107	AL8	C	637	645	Right-handed alpha
Helix 108	AL9	C	655	663	Right-handed alpha
Helix 109	AM1	C	665	670	Right-handed alpha
Helix 110	AM2	C	671	684	Right-handed alpha
Helix 111	AM3	C	691	701	Right-handed alpha
Helix 112	AM4	C	703	708	Right-handed alpha
Helix 113	AM5	C	723	733	Right-handed alpha
Helix 114	AM6	C	733	758	Right-handed alpha
Helix 115	AM7	C	765	790	Right-handed alpha
Helix 116	AM8	C	791	795	Right-handed 310
Helix 117	AM9	C	796	818	Right-handed alpha
Helix 118	AN1	C	821	852	Right-handed alpha
Helix 119	AN2	C	856	890	Right-handed alpha
Helix 120	AN3	C	895	912	Right-handed alpha
Helix 121	AN4	C	955	984	Right-handed alpha
Helix 122	AN5	C	989	1008	Right-handed alpha
Helix 123	AN6	C	1012	1014	Right-handed 310
Helix 124	AN7	C	1015	1028	Right-handed alpha
Helix 125	AN8	C	1050	1070	Right-handed alpha
Helix 126	AN9	C	1080	1104	Right-handed alpha
Helix 127	AO1	B	125	137	Right-handed alpha
Helix 128	AO2	B	158	176	Right-handed alpha
Helix 129	AO3	B	186	201	Right-handed alpha
Helix 130	AO4	B	276	287	Right-handed alpha
Helix 131	AO5	B	309	322	Right-handed alpha
Helix 132	AO6	B	333	343	Right-handed alpha
Helix 133	AO7	B	351	362	Right-handed alpha
Helix 134	AO8	B	362	369	Right-handed alpha
Helix 135	AO9	B	370	387	Right-handed alpha
Helix 136	AP1	B	403	419	Right-handed alpha
Helix 137	AP2	B	425	437	Right-handed alpha
Helix 138	AP3	B	438	445	Right-handed alpha
Helix 139	AP4	B	454	468	Right-handed alpha
Helix 140	AP5	B	470	480	Right-handed alpha
Helix 141	AP6	B	483	488	Right-handed alpha
Helix 142	AP7	B	489	500	Right-handed alpha
Helix 143	AP8	B	502	516	Right-handed alpha
Helix 144	AP9	B	518	533	Right-handed alpha
Helix 145	AQ1	B	559	570	Right-handed alpha
Helix 146	AQ2	B	573	584	Right-handed alpha
Helix 147	AQ3	B	586	602	Right-handed alpha
Helix 148	AQ4	B	607	636	Right-handed alpha
Helix 149	AQ5	B	637	645	Right-handed alpha
Helix 150	AQ6	B	655	663	Right-handed alpha
Helix 151	AQ7	B	665	670	Right-handed alpha
Helix 152	AQ8	B	671	684	Right-handed alpha
Helix 153	AQ9	B	691	701	Right-handed alpha
Helix 154	AR1	B	703	708	Right-handed alpha
Helix 155	AR2	B	723	733	Right-handed alpha
Helix 156	AR3	B	733	758	Right-handed alpha
Helix 157	AR4	B	765	790	Right-handed alpha
Helix 158	AR5	B	791	795	Right-handed 310
Helix 159	AR6	B	796	818	Right-handed alpha
Helix 160	AR7	B	821	852	Right-handed alpha
Helix 161	AR8	B	856	890	Right-handed alpha
Helix 162	AR9	B	895	912	Right-handed alpha
Helix 163	AS1	B	955	984	Right-handed alpha
Helix 164	AS2	B	989	1008	Right-handed alpha
Helix 165	AS3	B	1012	1014	Right-handed 310
Helix 166	AS4	B	1015	1028	Right-handed alpha
Helix 167	AS5	B	1050	1070	Right-handed alpha
Helix 168	AS6	B	1080	1104	Right-handed alpha

There are 8 sheets in PDB entry 9VJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	259	263	parallel
Strand 3	A	210	215	parallel
Strand 4	A	177	181	parallel
Strand 5	A	143	147	parallel
Strand 6	A	301	304	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	392	393	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	259	263	parallel
Strand 3	D	210	215	parallel
Strand 4	D	177	181	parallel
Strand 5	D	143	147	parallel
Strand 6	D	301	304	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	329	first strand
Strand 2	D	392	393	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	259	263	parallel
Strand 3	C	210	215	parallel
Strand 4	C	177	181	parallel
Strand 5	C	143	147	parallel
Strand 6	C	301	304	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	392	393	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	259	263	parallel
Strand 3	B	210	215	parallel
Strand 4	B	177	181	parallel
Strand 5	B	143	147	parallel
Strand 6	B	301	304	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	392	393	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJN