Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VJO entry

There are 4 chains in PDB entry 9VJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 102LYS 1104
C
 ALA 102LYS 1104
D
 ALA 102LYS 1104
B
 ALA 102LYS 1104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are170 helices in PDB entry 9VJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 134Right-handed alpha
Helix 2
AA2
A
158 176Right-handed alpha
Helix 3
AA3
A
187 202Right-handed alpha
Helix 4
AA4
A
274 288Right-handed alpha
Helix 5
AA5
A
311 322Right-handed alpha
Helix 6
AA6
A
335 342Right-handed alpha
Helix 7
AA7
A
351 362Right-handed alpha
Helix 8
AA8
A
362 369Right-handed alpha
Helix 9
AA9
A
370 386Right-handed alpha
Helix 10
AB1
A
403 418Right-handed alpha
Helix 11
AB2
A
426 437Right-handed alpha
Helix 12
AB3
A
438 446Right-handed alpha
Helix 13
AB4
A
455 457Right-handed 310
Helix 14
AB5
A
458 468Right-handed alpha
Helix 15
AB6
A
470 480Right-handed alpha
Helix 16
AB7
A
483 488Right-handed alpha
Helix 17
AB8
A
489 499Right-handed alpha
Helix 18
AB9
A
502 515Right-handed alpha
Helix 19
AC1
A
519 533Right-handed alpha
Helix 20
AC2
A
559 571Right-handed alpha
Helix 21
AC3
A
573 582Right-handed alpha
Helix 22
AC4
A
586 602Right-handed alpha
Helix 23
AC5
A
607 636Right-handed alpha
Helix 24
AC6
A
637 645Right-handed alpha
Helix 25
AC7
A
648 652Right-handed 310
Helix 26
AC8
A
655 663Right-handed alpha
Helix 27
AC9
A
665 670Right-handed alpha
Helix 28
AD1
A
671 684Right-handed alpha
Helix 29
AD2
A
691 701Right-handed alpha
Helix 30
AD3
A
728 732Right-handed alpha
Helix 31
AD4
A
733 758Right-handed alpha
Helix 32
AD5
A
765 788Right-handed alpha
Helix 33
AD6
A
792 795Right-handed 310
Helix 34
AD7
A
796 818Right-handed alpha
Helix 35
AD8
A
821 843Right-handed alpha
Helix 36
AD9
A
844 850Right-handed 310
Helix 37
AE1
A
853 867Right-handed alpha
Helix 38
AE2
A
867 889Right-handed alpha
Helix 39
AE3
A
957 988Right-handed alpha
Helix 40
AE4
A
989 1008Right-handed alpha
Helix 41
AE5
A
1012 1023Right-handed alpha
Helix 42
AE6
A
1048 1068Right-handed alpha
Helix 43
AE7
A
1068 1073Right-handed alpha
Helix 44
AE8
A
1075 1104Right-handed alpha
Helix 45
AE9
C
125 134Right-handed alpha
Helix 46
AF1
C
158 176Right-handed alpha
Helix 47
AF2
C
187 202Right-handed alpha
Helix 48
AF3
C
274 288Right-handed alpha
Helix 49
AF4
C
311 322Right-handed alpha
Helix 50
AF5
C
335 342Right-handed alpha
Helix 51
AF6
C
351 362Right-handed alpha
Helix 52
AF7
C
362 369Right-handed alpha
Helix 53
AF8
C
370 386Right-handed alpha
Helix 54
AF9
C
403 418Right-handed alpha
Helix 55
AG1
C
426 437Right-handed alpha
Helix 56
AG2
C
438 446Right-handed alpha
Helix 57
AG3
C
454 468Right-handed alpha
Helix 58
AG4
C
470 480Right-handed alpha
Helix 59
AG5
C
483 488Right-handed alpha
Helix 60
AG6
C
489 499Right-handed alpha
Helix 61
AG7
C
502 515Right-handed alpha
Helix 62
AG8
C
519 533Right-handed alpha
Helix 63
AG9
C
559 571Right-handed alpha
Helix 64
AH1
C
573 582Right-handed alpha
Helix 65
AH2
C
586 602Right-handed alpha
Helix 66
AH3
C
607 636Right-handed alpha
Helix 67
AH4
C
637 645Right-handed alpha
Helix 68
AH5
C
648 652Right-handed 310
Helix 69
AH6
C
655 663Right-handed alpha
Helix 70
AH7
C
665 670Right-handed alpha
Helix 71
AH8
C
671 684Right-handed alpha
Helix 72
AH9
C
691 701Right-handed alpha
Helix 73
AI1
C
728 732Right-handed alpha
Helix 74
AI2
C
733 758Right-handed alpha
Helix 75
AI3
C
765 788Right-handed alpha
Helix 76
AI4
C
792 795Right-handed 310
Helix 77
AI5
C
796 818Right-handed alpha
Helix 78
AI6
C
821 843Right-handed alpha
Helix 79
AI7
C
844 850Right-handed 310
Helix 80
AI8
C
853 867Right-handed alpha
Helix 81
AI9
C
867 889Right-handed alpha
Helix 82
AJ1
C
957 988Right-handed alpha
Helix 83
AJ2
C
989 1008Right-handed alpha
Helix 84
AJ3
C
1012 1023Right-handed alpha
Helix 85
AJ4
C
1048 1073Right-handed alpha
Helix 86
AJ5
C
1075 1104Right-handed alpha
Helix 87
AJ6
D
125 134Right-handed alpha
Helix 88
AJ7
D
158 176Right-handed alpha
Helix 89
AJ8
D
187 200Right-handed alpha
Helix 90
AJ9
D
276 287Right-handed alpha
Helix 91
AK1
D
309 322Right-handed alpha
Helix 92
AK2
D
335 343Right-handed alpha
Helix 93
AK3
D
351 362Right-handed alpha
Helix 94
AK4
D
362 369Right-handed alpha
Helix 95
AK5
D
370 387Right-handed alpha
Helix 96
AK6
D
403 418Right-handed alpha
Helix 97
AK7
D
426 437Right-handed alpha
Helix 98
AK8
D
438 445Right-handed alpha
Helix 99
AK9
D
454 469Right-handed alpha
Helix 100
AL1
D
470 479Right-handed alpha
Helix 101
AL2
D
483 488Right-handed alpha
Helix 102
AL3
D
489 499Right-handed alpha
Helix 103
AL4
D
502 516Right-handed alpha
Helix 104
AL5
D
518 530Right-handed alpha
Helix 105
AL6
D
559 571Right-handed alpha
Helix 106
AL7
D
573 582Right-handed alpha
Helix 107
AL8
D
586 602Right-handed alpha
Helix 108
AL9
D
607 636Right-handed alpha
Helix 109
AM1
D
636 645Right-handed alpha
Helix 110
AM2
D
648 652Right-handed 310
Helix 111
AM3
D
655 663Right-handed alpha
Helix 112
AM4
D
665 670Right-handed alpha
Helix 113
AM5
D
671 684Right-handed alpha
Helix 114
AM6
D
691 701Right-handed alpha
Helix 115
AM7
D
723 732Right-handed alpha
Helix 116
AM8
D
733 758Right-handed alpha
Helix 117
AM9
D
765 789Right-handed alpha
Helix 118
AN1
D
793 797Right-handed 310
Helix 119
AN2
D
799 818Right-handed alpha
Helix 120
AN3
D
821 841Right-handed alpha
Helix 121
AN4
D
842 847Right-handed alpha
Helix 122
AN5
D
848 850Right-handed 310
Helix 123
AN6
D
852 890Right-handed alpha
Helix 124
AN7
D
956 982Right-handed alpha
Helix 125
AN8
D
982 988Right-handed alpha
Helix 126
AN9
D
990 1008Right-handed alpha
Helix 127
AO1
D
1048 1073Right-handed alpha
Helix 128
AO2
D
1075 1104Right-handed alpha
Helix 129
AO3
B
125 134Right-handed alpha
Helix 130
AO4
B
158 176Right-handed alpha
Helix 131
AO5
B
187 200Right-handed alpha
Helix 132
AO6
B
276 287Right-handed alpha
Helix 133
AO7
B
309 322Right-handed alpha
Helix 134
AO8
B
335 343Right-handed alpha
Helix 135
AO9
B
351 362Right-handed alpha
Helix 136
AP1
B
362 369Right-handed alpha
Helix 137
AP2
B
370 387Right-handed alpha
Helix 138
AP3
B
403 418Right-handed alpha
Helix 139
AP4
B
426 437Right-handed alpha
Helix 140
AP5
B
438 445Right-handed alpha
Helix 141
AP6
B
454 469Right-handed alpha
Helix 142
AP7
B
470 479Right-handed alpha
Helix 143
AP8
B
483 488Right-handed alpha
Helix 144
AP9
B
489 499Right-handed alpha
Helix 145
AQ1
B
502 516Right-handed alpha
Helix 146
AQ2
B
518 530Right-handed alpha
Helix 147
AQ3
B
559 571Right-handed alpha
Helix 148
AQ4
B
573 582Right-handed alpha
Helix 149
AQ5
B
586 602Right-handed alpha
Helix 150
AQ6
B
607 636Right-handed alpha
Helix 151
AQ7
B
636 645Right-handed alpha
Helix 152
AQ8
B
648 652Right-handed 310
Helix 153
AQ9
B
655 663Right-handed alpha
Helix 154
AR1
B
665 670Right-handed alpha
Helix 155
AR2
B
671 684Right-handed alpha
Helix 156
AR3
B
691 701Right-handed alpha
Helix 157
AR4
B
723 732Right-handed alpha
Helix 158
AR5
B
733 758Right-handed alpha
Helix 159
AR6
B
765 789Right-handed alpha
Helix 160
AR7
B
793 797Right-handed 310
Helix 161
AR8
B
799 818Right-handed alpha
Helix 162
AR9
B
821 841Right-handed alpha
Helix 163
AS1
B
842 847Right-handed alpha
Helix 164
AS2
B
848 850Right-handed 310
Helix 165
AS3
B
852 890Right-handed alpha
Helix 166
AS4
B
956 982Right-handed alpha
Helix 167
AS5
B
982 988Right-handed alpha
Helix 168
AS6
B
990 1008Right-handed alpha
Helix 169
AS7
B
1048 1073Right-handed alpha
Helix 170
AS8
B
1075 1104Right-handed alpha
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There are 4 sheets in PDB entry 9VJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 263first strand
Strand 2
A
210 216parallel
Strand 3
A
178 181parallel
Strand 4
A
144 146parallel
Strand 5
A
301 304parallel
Strand 6
A
326 329parallel
Strand 7
A
391 393parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 263first strand
Strand 2
C
210 216parallel
Strand 3
C
178 181parallel
Strand 4
C
144 146parallel
Strand 5
C
301 304parallel
Strand 6
C
326 329parallel
Strand 7
C
391 393parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 119first strand
Strand 2
D
259 262parallel
Strand 3
D
210 215parallel
Strand 4
D
178 181parallel
Strand 5
D
144 146parallel
Strand 6
D
301 305parallel
Strand 7
D
326 329parallel
Strand 8
D
392 393parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 119first strand
Strand 2
B
259 262parallel
Strand 3
B
210 215parallel
Strand 4
B
178 181parallel
Strand 5
B
144 146parallel
Strand 6
B
301 305parallel
Strand 7
B
326 329parallel
Strand 8
B
392 393parallel
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