Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VJP entry

There are 4 chains in PDB entry 9VJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 102	LYS 1104
B	ALA 102	LYS 1104
C	ALA 102	LYS 1104
D	ALA 102	LYS 1104

There are176 helices in PDB entry 9VJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	136	Right-handed alpha
Helix 2	AA2	A	158	176	Right-handed alpha
Helix 3	AA3	A	187	201	Right-handed alpha
Helix 4	AA4	A	274	288	Right-handed alpha
Helix 5	AA5	A	309	322	Right-handed alpha
Helix 6	AA6	A	335	342	Right-handed alpha
Helix 7	AA7	A	351	362	Right-handed alpha
Helix 8	AA8	A	362	369	Right-handed alpha
Helix 9	AA9	A	370	387	Right-handed alpha
Helix 10	AB1	A	403	418	Right-handed alpha
Helix 11	AB2	A	425	437	Right-handed alpha
Helix 12	AB3	A	438	446	Right-handed alpha
Helix 13	AB4	A	454	468	Right-handed alpha
Helix 14	AB5	A	470	480	Right-handed alpha
Helix 15	AB6	A	483	488	Right-handed alpha
Helix 16	AB7	A	489	499	Right-handed alpha
Helix 17	AB8	A	502	515	Right-handed alpha
Helix 18	AB9	A	518	533	Right-handed alpha
Helix 19	AC1	A	559	571	Right-handed alpha
Helix 20	AC2	A	573	584	Right-handed alpha
Helix 21	AC3	A	586	602	Right-handed alpha
Helix 22	AC4	A	607	636	Right-handed alpha
Helix 23	AC5	A	637	646	Right-handed alpha
Helix 24	AC6	A	656	663	Right-handed alpha
Helix 25	AC7	A	665	671	Right-handed alpha
Helix 26	AC8	A	671	684	Right-handed alpha
Helix 27	AC9	A	691	701	Right-handed alpha
Helix 28	AD1	A	723	732	Right-handed alpha
Helix 29	AD2	A	733	758	Right-handed alpha
Helix 30	AD3	A	765	788	Right-handed alpha
Helix 31	AD4	A	789	795	Right-handed alpha
Helix 32	AD5	A	796	818	Right-handed alpha
Helix 33	AD6	A	821	843	Right-handed alpha
Helix 34	AD7	A	844	849	Right-handed 310
Helix 35	AD8	A	853	890	Right-handed alpha
Helix 36	AD9	A	895	913	Right-handed alpha
Helix 37	AE1	A	916	922	Right-handed alpha
Helix 38	AE2	A	957	987	Right-handed alpha
Helix 39	AE3	A	990	1008	Right-handed alpha
Helix 40	AE4	A	1012	1014	Right-handed 310
Helix 41	AE5	A	1015	1023	Right-handed alpha
Helix 42	AE6	A	1048	1069	Right-handed alpha
Helix 43	AE7	A	1070	1074	Right-handed 310
Helix 44	AE8	A	1075	1104	Right-handed alpha
Helix 45	AE9	B	125	136	Right-handed alpha
Helix 46	AF1	B	158	176	Right-handed alpha
Helix 47	AF2	B	187	201	Right-handed alpha
Helix 48	AF3	B	274	288	Right-handed alpha
Helix 49	AF4	B	309	322	Right-handed alpha
Helix 50	AF5	B	335	342	Right-handed alpha
Helix 51	AF6	B	351	362	Right-handed alpha
Helix 52	AF7	B	362	369	Right-handed alpha
Helix 53	AF8	B	370	387	Right-handed alpha
Helix 54	AF9	B	403	418	Right-handed alpha
Helix 55	AG1	B	425	437	Right-handed alpha
Helix 56	AG2	B	438	446	Right-handed alpha
Helix 57	AG3	B	454	468	Right-handed alpha
Helix 58	AG4	B	470	480	Right-handed alpha
Helix 59	AG5	B	483	488	Right-handed alpha
Helix 60	AG6	B	489	499	Right-handed alpha
Helix 61	AG7	B	502	515	Right-handed alpha
Helix 62	AG8	B	518	533	Right-handed alpha
Helix 63	AG9	B	559	571	Right-handed alpha
Helix 64	AH1	B	573	584	Right-handed alpha
Helix 65	AH2	B	586	602	Right-handed alpha
Helix 66	AH3	B	607	636	Right-handed alpha
Helix 67	AH4	B	637	646	Right-handed alpha
Helix 68	AH5	B	656	663	Right-handed alpha
Helix 69	AH6	B	665	671	Right-handed alpha
Helix 70	AH7	B	671	684	Right-handed alpha
Helix 71	AH8	B	691	701	Right-handed alpha
Helix 72	AH9	B	723	732	Right-handed alpha
Helix 73	AI1	B	733	758	Right-handed alpha
Helix 74	AI2	B	765	788	Right-handed alpha
Helix 75	AI3	B	789	795	Right-handed alpha
Helix 76	AI4	B	796	818	Right-handed alpha
Helix 77	AI5	B	821	843	Right-handed alpha
Helix 78	AI6	B	844	849	Right-handed 310
Helix 79	AI7	B	853	890	Right-handed alpha
Helix 80	AI8	B	895	913	Right-handed alpha
Helix 81	AI9	B	916	922	Right-handed alpha
Helix 82	AJ1	B	957	987	Right-handed alpha
Helix 83	AJ2	B	990	1008	Right-handed alpha
Helix 84	AJ3	B	1012	1014	Right-handed 310
Helix 85	AJ4	B	1015	1023	Right-handed alpha
Helix 86	AJ5	B	1048	1069	Right-handed alpha
Helix 87	AJ6	B	1070	1074	Right-handed 310
Helix 88	AJ7	B	1075	1104	Right-handed alpha
Helix 89	AJ8	C	125	136	Right-handed alpha
Helix 90	AJ9	C	158	176	Right-handed alpha
Helix 91	AK1	C	187	201	Right-handed alpha
Helix 92	AK2	C	274	288	Right-handed alpha
Helix 93	AK3	C	309	322	Right-handed alpha
Helix 94	AK4	C	335	342	Right-handed alpha
Helix 95	AK5	C	351	362	Right-handed alpha
Helix 96	AK6	C	362	369	Right-handed alpha
Helix 97	AK7	C	370	387	Right-handed alpha
Helix 98	AK8	C	403	418	Right-handed alpha
Helix 99	AK9	C	425	437	Right-handed alpha
Helix 100	AL1	C	438	446	Right-handed alpha
Helix 101	AL2	C	454	468	Right-handed alpha
Helix 102	AL3	C	470	480	Right-handed alpha
Helix 103	AL4	C	483	488	Right-handed alpha
Helix 104	AL5	C	489	499	Right-handed alpha
Helix 105	AL6	C	502	515	Right-handed alpha
Helix 106	AL7	C	518	533	Right-handed alpha
Helix 107	AL8	C	559	571	Right-handed alpha
Helix 108	AL9	C	573	584	Right-handed alpha
Helix 109	AM1	C	586	602	Right-handed alpha
Helix 110	AM2	C	607	636	Right-handed alpha
Helix 111	AM3	C	637	646	Right-handed alpha
Helix 112	AM4	C	656	663	Right-handed alpha
Helix 113	AM5	C	665	671	Right-handed alpha
Helix 114	AM6	C	671	684	Right-handed alpha
Helix 115	AM7	C	691	701	Right-handed alpha
Helix 116	AM8	C	723	732	Right-handed alpha
Helix 117	AM9	C	733	758	Right-handed alpha
Helix 118	AN1	C	765	788	Right-handed alpha
Helix 119	AN2	C	789	795	Right-handed alpha
Helix 120	AN3	C	796	818	Right-handed alpha
Helix 121	AN4	C	821	843	Right-handed alpha
Helix 122	AN5	C	844	849	Right-handed 310
Helix 123	AN6	C	853	890	Right-handed alpha
Helix 124	AN7	C	895	913	Right-handed alpha
Helix 125	AN8	C	916	922	Right-handed alpha
Helix 126	AN9	C	957	987	Right-handed alpha
Helix 127	AO1	C	990	1008	Right-handed alpha
Helix 128	AO2	C	1012	1014	Right-handed 310
Helix 129	AO3	C	1015	1023	Right-handed alpha
Helix 130	AO4	C	1048	1069	Right-handed alpha
Helix 131	AO5	C	1070	1074	Right-handed 310
Helix 132	AO6	C	1075	1104	Right-handed alpha
Helix 133	AO7	D	125	136	Right-handed alpha
Helix 134	AO8	D	158	176	Right-handed alpha
Helix 135	AO9	D	187	201	Right-handed alpha
Helix 136	AP1	D	274	288	Right-handed alpha
Helix 137	AP2	D	309	322	Right-handed alpha
Helix 138	AP3	D	335	342	Right-handed alpha
Helix 139	AP4	D	351	362	Right-handed alpha
Helix 140	AP5	D	362	369	Right-handed alpha
Helix 141	AP6	D	370	387	Right-handed alpha
Helix 142	AP7	D	403	418	Right-handed alpha
Helix 143	AP8	D	425	437	Right-handed alpha
Helix 144	AP9	D	438	446	Right-handed alpha
Helix 145	AQ1	D	454	468	Right-handed alpha
Helix 146	AQ2	D	470	480	Right-handed alpha
Helix 147	AQ3	D	483	488	Right-handed alpha
Helix 148	AQ4	D	489	499	Right-handed alpha
Helix 149	AQ5	D	502	515	Right-handed alpha
Helix 150	AQ6	D	518	533	Right-handed alpha
Helix 151	AQ7	D	559	571	Right-handed alpha
Helix 152	AQ8	D	573	584	Right-handed alpha
Helix 153	AQ9	D	586	602	Right-handed alpha
Helix 154	AR1	D	607	636	Right-handed alpha
Helix 155	AR2	D	637	646	Right-handed alpha
Helix 156	AR3	D	656	663	Right-handed alpha
Helix 157	AR4	D	665	671	Right-handed alpha
Helix 158	AR5	D	671	684	Right-handed alpha
Helix 159	AR6	D	691	701	Right-handed alpha
Helix 160	AR7	D	723	732	Right-handed alpha
Helix 161	AR8	D	733	758	Right-handed alpha
Helix 162	AR9	D	765	788	Right-handed alpha
Helix 163	AS1	D	789	795	Right-handed alpha
Helix 164	AS2	D	796	818	Right-handed alpha
Helix 165	AS3	D	821	843	Right-handed alpha
Helix 166	AS4	D	844	849	Right-handed 310
Helix 167	AS5	D	853	890	Right-handed alpha
Helix 168	AS6	D	895	913	Right-handed alpha
Helix 169	AS7	D	916	922	Right-handed alpha
Helix 170	AS8	D	957	987	Right-handed alpha
Helix 171	AS9	D	990	1008	Right-handed alpha
Helix 172	AT1	D	1012	1014	Right-handed 310
Helix 173	AT2	D	1015	1023	Right-handed alpha
Helix 174	AT3	D	1048	1069	Right-handed alpha
Helix 175	AT4	D	1070	1074	Right-handed 310
Helix 176	AT5	D	1075	1104	Right-handed alpha

There are 8 sheets in PDB entry 9VJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	121	first strand
Strand 2	A	259	264	parallel
Strand 3	A	210	213	parallel
Strand 4	A	178	181	parallel
Strand 5	A	144	146	parallel
Strand 6	A	301	304	parallel
Strand 7	A	326	329	parallel
Strand 8	A	392	393	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	654	655	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	121	first strand
Strand 2	B	259	264	parallel
Strand 3	B	210	213	parallel
Strand 4	B	178	181	parallel
Strand 5	B	144	146	parallel
Strand 6	B	301	304	parallel
Strand 7	B	326	329	parallel
Strand 8	B	392	393	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	647	648	first strand
Strand 2	B	654	655	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	259	264	parallel
Strand 3	C	210	213	parallel
Strand 4	C	178	181	parallel
Strand 5	C	144	146	parallel
Strand 6	C	301	304	parallel
Strand 7	C	326	329	parallel
Strand 8	C	392	393	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	647	648	first strand
Strand 2	C	654	655	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	121	first strand
Strand 2	D	259	264	parallel
Strand 3	D	210	213	parallel
Strand 4	D	178	181	parallel
Strand 5	D	144	146	parallel
Strand 6	D	301	304	parallel
Strand 7	D	326	329	parallel
Strand 8	D	392	393	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	647	648	first strand
Strand 2	D	654	655	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJP