Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VJQ entry

There are 4 chains in PDB entry 9VJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 102	LYS 1104
D	ALA 102	LYS 1104
B	ALA 102	LYS 1104
C	ALA 102	LYS 1104

There are164 helices in PDB entry 9VJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	136	Right-handed alpha
Helix 2	AA2	A	158	176	Right-handed alpha
Helix 3	AA3	A	187	201	Right-handed alpha
Helix 4	AA4	A	274	288	Right-handed alpha
Helix 5	AA5	A	309	322	Right-handed alpha
Helix 6	AA6	A	335	342	Right-handed alpha
Helix 7	AA7	A	351	362	Right-handed alpha
Helix 8	AA8	A	362	369	Right-handed alpha
Helix 9	AA9	A	370	387	Right-handed alpha
Helix 10	AB1	A	403	418	Right-handed alpha
Helix 11	AB2	A	425	437	Right-handed alpha
Helix 12	AB3	A	438	446	Right-handed alpha
Helix 13	AB4	A	458	468	Right-handed alpha
Helix 14	AB5	A	470	480	Right-handed alpha
Helix 15	AB6	A	483	488	Right-handed alpha
Helix 16	AB7	A	489	499	Right-handed alpha
Helix 17	AB8	A	502	516	Right-handed alpha
Helix 18	AB9	A	518	533	Right-handed alpha
Helix 19	AC1	A	559	571	Right-handed alpha
Helix 20	AC2	A	573	582	Right-handed alpha
Helix 21	AC3	A	586	602	Right-handed alpha
Helix 22	AC4	A	612	636	Right-handed alpha
Helix 23	AC5	A	637	645	Right-handed alpha
Helix 24	AC6	A	648	652	Right-handed 310
Helix 25	AC7	A	655	663	Right-handed alpha
Helix 26	AC8	A	665	670	Right-handed alpha
Helix 27	AC9	A	671	684	Right-handed alpha
Helix 28	AD1	A	691	701	Right-handed alpha
Helix 29	AD2	A	724	732	Right-handed alpha
Helix 30	AD3	A	733	758	Right-handed alpha
Helix 31	AD4	A	768	788	Right-handed alpha
Helix 32	AD5	A	789	795	Right-handed alpha
Helix 33	AD6	A	798	813	Right-handed alpha
Helix 34	AD7	A	826	840	Right-handed alpha
Helix 35	AD8	A	841	850	Right-handed 310
Helix 36	AD9	A	853	890	Right-handed alpha
Helix 37	AE1	A	963	987	Right-handed alpha
Helix 38	AE2	A	990	1008	Right-handed alpha
Helix 39	AE3	A	1012	1017	Right-handed alpha
Helix 40	AE4	A	1048	1068	Right-handed alpha
Helix 41	AE5	A	1075	1104	Right-handed alpha
Helix 42	AE6	D	125	136	Right-handed alpha
Helix 43	AE7	D	158	176	Right-handed alpha
Helix 44	AE8	D	187	201	Right-handed alpha
Helix 45	AE9	D	274	288	Right-handed alpha
Helix 46	AF1	D	309	322	Right-handed alpha
Helix 47	AF2	D	335	342	Right-handed alpha
Helix 48	AF3	D	351	362	Right-handed alpha
Helix 49	AF4	D	362	369	Right-handed alpha
Helix 50	AF5	D	370	387	Right-handed alpha
Helix 51	AF6	D	403	418	Right-handed alpha
Helix 52	AF7	D	425	437	Right-handed alpha
Helix 53	AF8	D	438	446	Right-handed alpha
Helix 54	AF9	D	458	468	Right-handed alpha
Helix 55	AG1	D	470	480	Right-handed alpha
Helix 56	AG2	D	483	488	Right-handed alpha
Helix 57	AG3	D	489	499	Right-handed alpha
Helix 58	AG4	D	502	516	Right-handed alpha
Helix 59	AG5	D	518	533	Right-handed alpha
Helix 60	AG6	D	559	571	Right-handed alpha
Helix 61	AG7	D	573	582	Right-handed alpha
Helix 62	AG8	D	586	602	Right-handed alpha
Helix 63	AG9	D	612	636	Right-handed alpha
Helix 64	AH1	D	637	644	Right-handed alpha
Helix 65	AH2	D	648	652	Right-handed 310
Helix 66	AH3	D	655	663	Right-handed alpha
Helix 67	AH4	D	665	670	Right-handed alpha
Helix 68	AH5	D	671	684	Right-handed alpha
Helix 69	AH6	D	691	701	Right-handed alpha
Helix 70	AH7	D	724	732	Right-handed alpha
Helix 71	AH8	D	733	758	Right-handed alpha
Helix 72	AH9	D	768	788	Right-handed alpha
Helix 73	AI1	D	789	795	Right-handed alpha
Helix 74	AI2	D	798	813	Right-handed alpha
Helix 75	AI3	D	826	840	Right-handed alpha
Helix 76	AI4	D	841	850	Right-handed 310
Helix 77	AI5	D	853	890	Right-handed alpha
Helix 78	AI6	D	963	987	Right-handed alpha
Helix 79	AI7	D	990	1008	Right-handed alpha
Helix 80	AI8	D	1012	1017	Right-handed alpha
Helix 81	AI9	D	1048	1068	Right-handed alpha
Helix 82	AJ1	D	1075	1104	Right-handed alpha
Helix 83	AJ2	B	125	136	Right-handed alpha
Helix 84	AJ3	B	158	176	Right-handed alpha
Helix 85	AJ4	B	187	201	Right-handed alpha
Helix 86	AJ5	B	274	288	Right-handed alpha
Helix 87	AJ6	B	309	322	Right-handed alpha
Helix 88	AJ7	B	335	342	Right-handed alpha
Helix 89	AJ8	B	351	362	Right-handed alpha
Helix 90	AJ9	B	362	369	Right-handed alpha
Helix 91	AK1	B	370	387	Right-handed alpha
Helix 92	AK2	B	403	418	Right-handed alpha
Helix 93	AK3	B	425	437	Right-handed alpha
Helix 94	AK4	B	438	446	Right-handed alpha
Helix 95	AK5	B	458	468	Right-handed alpha
Helix 96	AK6	B	470	480	Right-handed alpha
Helix 97	AK7	B	483	488	Right-handed alpha
Helix 98	AK8	B	489	499	Right-handed alpha
Helix 99	AK9	B	502	516	Right-handed alpha
Helix 100	AL1	B	518	533	Right-handed alpha
Helix 101	AL2	B	559	571	Right-handed alpha
Helix 102	AL3	B	573	582	Right-handed alpha
Helix 103	AL4	B	586	602	Right-handed alpha
Helix 104	AL5	B	612	636	Right-handed alpha
Helix 105	AL6	B	637	644	Right-handed alpha
Helix 106	AL7	B	648	652	Right-handed 310
Helix 107	AL8	B	655	663	Right-handed alpha
Helix 108	AL9	B	665	670	Right-handed alpha
Helix 109	AM1	B	671	684	Right-handed alpha
Helix 110	AM2	B	691	701	Right-handed alpha
Helix 111	AM3	B	724	732	Right-handed alpha
Helix 112	AM4	B	733	758	Right-handed alpha
Helix 113	AM5	B	768	788	Right-handed alpha
Helix 114	AM6	B	789	795	Right-handed alpha
Helix 115	AM7	B	798	813	Right-handed alpha
Helix 116	AM8	B	826	840	Right-handed alpha
Helix 117	AM9	B	841	850	Right-handed 310
Helix 118	AN1	B	853	890	Right-handed alpha
Helix 119	AN2	B	963	987	Right-handed alpha
Helix 120	AN3	B	990	1008	Right-handed alpha
Helix 121	AN4	B	1012	1017	Right-handed alpha
Helix 122	AN5	B	1048	1068	Right-handed alpha
Helix 123	AN6	B	1075	1104	Right-handed alpha
Helix 124	AN7	C	125	136	Right-handed alpha
Helix 125	AN8	C	158	176	Right-handed alpha
Helix 126	AN9	C	187	201	Right-handed alpha
Helix 127	AO1	C	274	288	Right-handed alpha
Helix 128	AO2	C	309	322	Right-handed alpha
Helix 129	AO3	C	335	342	Right-handed alpha
Helix 130	AO4	C	351	362	Right-handed alpha
Helix 131	AO5	C	362	369	Right-handed alpha
Helix 132	AO6	C	370	387	Right-handed alpha
Helix 133	AO7	C	403	418	Right-handed alpha
Helix 134	AO8	C	425	437	Right-handed alpha
Helix 135	AO9	C	438	446	Right-handed alpha
Helix 136	AP1	C	458	468	Right-handed alpha
Helix 137	AP2	C	470	480	Right-handed alpha
Helix 138	AP3	C	483	488	Right-handed alpha
Helix 139	AP4	C	489	499	Right-handed alpha
Helix 140	AP5	C	502	516	Right-handed alpha
Helix 141	AP6	C	518	533	Right-handed alpha
Helix 142	AP7	C	559	571	Right-handed alpha
Helix 143	AP8	C	573	582	Right-handed alpha
Helix 144	AP9	C	586	602	Right-handed alpha
Helix 145	AQ1	C	612	636	Right-handed alpha
Helix 146	AQ2	C	637	644	Right-handed alpha
Helix 147	AQ3	C	648	652	Right-handed 310
Helix 148	AQ4	C	655	663	Right-handed alpha
Helix 149	AQ5	C	665	670	Right-handed alpha
Helix 150	AQ6	C	671	684	Right-handed alpha
Helix 151	AQ7	C	691	701	Right-handed alpha
Helix 152	AQ8	C	724	732	Right-handed alpha
Helix 153	AQ9	C	733	758	Right-handed alpha
Helix 154	AR1	C	768	788	Right-handed alpha
Helix 155	AR2	C	789	795	Right-handed alpha
Helix 156	AR3	C	798	813	Right-handed alpha
Helix 157	AR4	C	826	840	Right-handed alpha
Helix 158	AR5	C	841	850	Right-handed 310
Helix 159	AR6	C	853	890	Right-handed alpha
Helix 160	AR7	C	963	987	Right-handed alpha
Helix 161	AR8	C	990	1008	Right-handed alpha
Helix 162	AR9	C	1012	1017	Right-handed alpha
Helix 163	AS1	C	1048	1068	Right-handed alpha
Helix 164	AS2	C	1075	1104	Right-handed alpha

There are 8 sheets in PDB entry 9VJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	262	264	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	210	213	parallel
Strand 3	A	177	181	parallel
Strand 4	A	143	146	parallel
Strand 5	A	302	305	parallel
Strand 6	A	326	329	parallel
Strand 7	A	392	393	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	262	264	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	210	213	parallel
Strand 3	D	177	181	parallel
Strand 4	D	143	146	parallel
Strand 5	D	302	305	parallel
Strand 6	D	326	329	parallel
Strand 7	D	392	393	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	262	264	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	210	213	parallel
Strand 3	B	177	181	parallel
Strand 4	B	143	146	parallel
Strand 5	B	302	305	parallel
Strand 6	B	326	329	parallel
Strand 7	B	392	393	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	262	264	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	210	213	parallel
Strand 3	C	177	181	parallel
Strand 4	C	143	146	parallel
Strand 5	C	302	305	parallel
Strand 6	C	326	329	parallel
Strand 7	C	392	393	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJQ