Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VJS entry

There are 23 chains in PDB entry 9VJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 12	GLY 751
B	LYS 4	PHE 733
C	SER 2	TYR 81
D	TRP 14	VAL 200
E	LYS 37	TYR 99
F	GLU 7	ARG 172
J	MET 1	LEU 37
M	MET 1	GLN 31
a	ARG 9	THR 207
b	SER 7	ALA 225
c	LEU 9	GLY 230
d	ARG 9	GLY 180
e	ARG 8	ALA 173
f	ARG 8	THR 179
g	LYS 8	PRO 189
h	ARG 11	ALA 188
i	ARG 8	THR 179
j	ARG 10	PRO 189
k	GLY 6	VAL 173
l	GLY 6	PRO 172
m	GLY 6	VAL 173
n	PRO 18	VAL 173
o	ARG 11	VAL 187

There are185 helices in PDB entry 9VJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	36	41	Right-handed alpha
Helix 3	AA3	A	46	55	Right-handed alpha
Helix 4	AA4	A	58	63	Right-handed alpha
Helix 5	AA5	A	65	98	Right-handed alpha
Helix 6	AA6	A	100	107	Right-handed alpha
Helix 7	AA7	A	123	128	Right-handed 310
Helix 8	AA8	A	143	152	Right-handed alpha
Helix 9	AA9	A	155	183	Right-handed alpha
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	193	204	Right-handed alpha
Helix 12	AB3	A	204	220	Right-handed alpha
Helix 13	AB4	A	221	231	Right-handed alpha
Helix 14	AB5	A	233	237	Right-handed 310
Helix 15	AB6	A	239	246	Right-handed alpha
Helix 16	AB7	A	246	254	Right-handed alpha
Helix 17	AB8	A	255	260	Right-handed 310
Helix 18	AB9	A	261	266	Right-handed alpha
Helix 19	AC1	A	268	273	Right-handed 310
Helix 20	AC2	A	290	309	Right-handed alpha
Helix 21	AC3	A	321	328	Right-handed alpha
Helix 22	AC4	A	340	347	Right-handed alpha
Helix 23	AC5	A	348	374	Right-handed alpha
Helix 24	AC6	A	383	416	Right-handed alpha
Helix 25	AC7	A	425	432	Right-handed alpha
Helix 26	AC8	A	433	465	Right-handed alpha
Helix 27	AC9	A	467	471	Right-handed 310
Helix 28	AD1	A	481	494	Right-handed alpha
Helix 29	AD2	A	529	556	Right-handed alpha
Helix 30	AD3	A	587	618	Right-handed alpha
Helix 31	AD4	A	634	639	Right-handed alpha
Helix 32	AD5	A	641	649	Right-handed alpha
Helix 33	AD6	A	649	654	Right-handed alpha
Helix 34	AD7	A	654	659	Right-handed alpha
Helix 35	AD8	A	665	688	Right-handed alpha
Helix 36	AD9	A	689	707	Right-handed alpha
Helix 37	AE1	A	719	751	Right-handed alpha
Helix 38	AE2	B	9	14	Right-handed alpha
Helix 39	AE3	B	18	27	Right-handed alpha
Helix 40	AE4	B	30	34	Right-handed 310
Helix 41	AE5	B	38	72	Right-handed alpha
Helix 42	AE6	B	73	78	Right-handed alpha
Helix 43	AE7	B	97	105	Right-handed alpha
Helix 44	AE8	B	119	127	Right-handed alpha
Helix 45	AE9	B	131	158	Right-handed alpha
Helix 46	AF1	B	164	169	Right-handed alpha
Helix 47	AF2	B	170	181	Right-handed alpha
Helix 48	AF3	B	183	197	Right-handed alpha
Helix 49	AF4	B	197	203	Right-handed alpha
Helix 50	AF5	B	222	228	Right-handed alpha
Helix 51	AF6	B	229	235	Right-handed 310
Helix 52	AF7	B	269	288	Right-handed alpha
Helix 53	AF8	B	300	307	Right-handed alpha
Helix 54	AF9	B	321	328	Right-handed alpha
Helix 55	AG1	B	329	355	Right-handed alpha
Helix 56	AG2	B	364	397	Right-handed alpha
Helix 57	AG3	B	406	411	Right-handed alpha
Helix 58	AG4	B	414	446	Right-handed alpha
Helix 59	AG5	B	448	452	Right-handed 310
Helix 60	AG6	B	457	468	Right-handed alpha
Helix 61	AG7	B	476	480	Right-handed 310
Helix 62	AG8	B	493	502	Right-handed alpha
Helix 63	AG9	B	513	540	Right-handed alpha
Helix 64	AH1	B	549	554	Right-handed alpha
Helix 65	AH2	B	571	604	Right-handed alpha
Helix 66	AH3	B	605	613	Right-handed alpha
Helix 67	AH4	B	615	623	Right-handed alpha
Helix 68	AH5	B	643	666	Right-handed alpha
Helix 69	AH6	B	667	685	Right-handed alpha
Helix 70	AH7	B	701	733	Right-handed alpha
Helix 71	AH8	C	44	48	Right-handed 310
Helix 72	AH9	C	52	57	Right-handed alpha
Helix 73	AI1	D	18	24	Right-handed alpha
Helix 74	AI2	D	25	37	Right-handed alpha
Helix 75	AI3	D	41	51	Right-handed alpha
Helix 76	AI4	D	56	63	Right-handed alpha
Helix 77	AI5	D	72	77	Right-handed 310
Helix 78	AI6	D	114	128	Right-handed alpha
Helix 79	AI7	D	174	178	Right-handed 310
Helix 80	AI8	D	180	185	Right-handed 310
Helix 81	AI9	D	190	194	Right-handed 310
Helix 82	AJ1	E	93	95	Right-handed 310
Helix 83	AJ2	F	18	37	Right-handed alpha
Helix 84	AJ3	F	43	67	Right-handed alpha
Helix 85	AJ4	F	81	88	Right-handed alpha
Helix 86	AJ5	F	94	120	Right-handed alpha
Helix 87	AJ6	F	126	131	Right-handed alpha
Helix 88	AJ7	F	133	144	Right-handed alpha
Helix 89	AJ8	F	146	158	Right-handed alpha
Helix 90	AJ9	J	3	9	Right-handed alpha
Helix 91	AK1	J	10	33	Right-handed alpha
Helix 92	AK2	M	4	15	Right-handed alpha
Helix 93	AK3	M	15	31	Right-handed alpha
Helix 94	AK4	a	40	74	Right-handed alpha
Helix 95	AK5	a	84	92	Right-handed alpha
Helix 96	AK6	a	97	99	Right-handed 310
Helix 97	AK7	a	107	128	Right-handed alpha
Helix 98	AK8	a	145	149	Right-handed 310
Helix 99	AK9	a	156	184	Right-handed alpha
Helix 100	AL1	a	187	198	Right-handed alpha
Helix 101	AL2	b	18	22	Right-handed 310
Helix 102	AL3	b	48	84	Right-handed alpha
Helix 103	AL4	b	95	100	Right-handed 310
Helix 104	AL5	b	106	110	Right-handed 310
Helix 105	AL6	b	118	140	Right-handed alpha
Helix 106	AL7	b	154	158	Right-handed 310
Helix 107	AL8	b	165	197	Right-handed alpha
Helix 108	AL9	b	200	211	Right-handed alpha
Helix 109	AM1	b	220	224	Right-handed 310
Helix 110	AM2	c	21	25	Right-handed 310
Helix 111	AM3	c	50	84	Right-handed alpha
Helix 112	AM4	c	97	103	Right-handed 310
Helix 113	AM5	c	110	112	Right-handed 310
Helix 114	AM6	c	120	142	Right-handed alpha
Helix 115	AM7	c	155	159	Right-handed 310
Helix 116	AM8	c	166	198	Right-handed alpha
Helix 117	AM9	c	201	212	Right-handed alpha
Helix 118	AN1	c	217	230	Right-handed alpha
Helix 119	AN2	d	40	72	Right-handed alpha
Helix 120	AN3	d	77	82	Right-handed 310
Helix 121	AN4	d	94	116	Right-handed alpha
Helix 122	AN5	d	139	167	Right-handed alpha
Helix 123	AN6	d	170	180	Right-handed alpha
Helix 124	AN7	e	39	70	Right-handed alpha
Helix 125	AN8	e	85	105	Right-handed alpha
Helix 126	AN9	e	112	117	Right-handed alpha
Helix 127	AO1	e	131	159	Right-handed alpha
Helix 128	AO2	e	162	171	Right-handed alpha
Helix 129	AO3	f	39	70	Right-handed alpha
Helix 130	AO4	f	83	105	Right-handed alpha
Helix 131	AO5	f	129	157	Right-handed alpha
Helix 132	AO6	f	160	171	Right-handed alpha
Helix 133	AO7	g	41	72	Right-handed alpha
Helix 134	AO8	g	79	83	Right-handed 310
Helix 135	AO9	g	85	107	Right-handed alpha
Helix 136	AP1	g	131	159	Right-handed alpha
Helix 137	AP2	g	162	173	Right-handed alpha
Helix 138	AP3	g	178	185	Right-handed alpha
Helix 139	AP4	h	43	75	Right-handed alpha
Helix 140	AP5	h	78	86	Right-handed alpha
Helix 141	AP6	h	89	99	Right-handed alpha
Helix 142	AP7	h	100	110	Right-handed alpha
Helix 143	AP8	h	114	119	Right-handed alpha
Helix 144	AP9	h	129	157	Right-handed alpha
Helix 145	AQ1	h	160	171	Right-handed alpha
Helix 146	AQ2	h	176	182	Right-handed alpha
Helix 147	AQ3	i	39	71	Right-handed alpha
Helix 148	AQ4	i	83	105	Right-handed alpha
Helix 149	AQ5	i	129	158	Right-handed alpha
Helix 150	AQ6	i	160	171	Right-handed alpha
Helix 151	AQ7	j	41	73	Right-handed alpha
Helix 152	AQ8	j	76	83	Right-handed 310
Helix 153	AQ9	j	85	107	Right-handed alpha
Helix 154	AR1	j	110	114	Right-handed 310
Helix 155	AR2	j	131	160	Right-handed alpha
Helix 156	AR3	j	162	173	Right-handed alpha
Helix 157	AR4	j	178	185	Right-handed alpha
Helix 158	AR5	k	40	71	Right-handed alpha
Helix 159	AR6	k	75	82	Right-handed 310
Helix 160	AR7	k	84	106	Right-handed alpha
Helix 161	AR8	k	129	158	Right-handed alpha
Helix 162	AR9	k	160	170	Right-handed alpha
Helix 163	AS1	l	40	72	Right-handed alpha
Helix 164	AS2	l	78	83	Right-handed alpha
Helix 165	AS3	l	84	106	Right-handed alpha
Helix 166	AS4	l	129	157	Right-handed alpha
Helix 167	AS5	l	160	171	Right-handed alpha
Helix 168	AS6	m	40	72	Right-handed alpha
Helix 169	AS7	m	75	82	Right-handed 310
Helix 170	AS8	m	84	104	Right-handed alpha
Helix 171	AS9	m	129	157	Right-handed alpha
Helix 172	AT1	m	160	171	Right-handed alpha
Helix 173	AT2	n	40	72	Right-handed alpha
Helix 174	AT3	n	78	83	Right-handed alpha
Helix 175	AT4	n	84	106	Right-handed alpha
Helix 176	AT5	n	129	157	Right-handed alpha
Helix 177	AT6	n	160	169	Right-handed alpha
Helix 178	AT7	o	43	75	Right-handed alpha
Helix 179	AT8	o	78	86	Right-handed alpha
Helix 180	AT9	o	89	99	Right-handed alpha
Helix 181	AU1	o	100	110	Right-handed alpha
Helix 182	AU2	o	114	118	Right-handed 310
Helix 183	AU3	o	129	157	Right-handed alpha
Helix 184	AU4	o	160	171	Right-handed alpha
Helix 185	AU5	o	176	182	Right-handed alpha

There are 14 sheets in PDB entry 9VJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	170	171	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	112	first strand
Strand 2	D	80	87	anti-parallel
Strand 3	D	137	141	anti-parallel
Strand 4	D	147	149	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	100	103	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	92	first strand
Strand 2	E	75	78	anti-parallel
Strand 3	E	59	64	anti-parallel
Strand 4	E	45	48	anti-parallel
Strand 5	E	97	98	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	69	70	anti-parallel
Strand 3	F	76	77	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	94	95	first strand
Strand 2	a	103	105	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	107	108	first strand
Strand 2	c	116	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VJS