Analysis of interatomic Contacts of Structural Units in PDB entry:
9VK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VK4 entry

There are 2 chains in PDB entry 9VK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29ARG 327
B
 ALA 29ARG 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9VK4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 37Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
56 65Right-handed alpha
Helix 4
AA4
A
75 80Right-handed alpha
Helix 5
AA5
A
88 101Right-handed alpha
Helix 6
AA6
A
117 122Right-handed alpha
Helix 7
AA7
A
125 144Right-handed alpha
Helix 8
AA8
A
167 173Right-handed alpha
Helix 9
AA9
A
176 189Right-handed alpha
Helix 10
AB1
A
206 222Right-handed alpha
Helix 11
AB2
A
238 241Right-handed 310
Helix 12
AB3
A
242 252Right-handed alpha
Helix 13
AB4
A
269 282Right-handed alpha
Helix 14
AB5
A
295 299Right-handed 310
Helix 15
AB6
A
301 305Right-handed 310
Helix 16
AB7
A
316 327Right-handed alpha
Helix 17
AB8
B
30 37Right-handed alpha
Helix 18
AB9
B
48 53Right-handed alpha
Helix 19
AC1
B
56 65Right-handed alpha
Helix 20
AC2
B
75 80Right-handed alpha
Helix 21
AC3
B
88 102Right-handed alpha
Helix 22
AC4
B
117 122Right-handed alpha
Helix 23
AC5
B
125 144Right-handed alpha
Helix 24
AC6
B
167 174Right-handed alpha
Helix 25
AC7
B
176 189Right-handed alpha
Helix 26
AC8
B
206 222Right-handed alpha
Helix 27
AC9
B
238 241Right-handed 310
Helix 28
AD1
B
242 252Right-handed alpha
Helix 29
AD2
B
269 283Right-handed alpha
Helix 30
AD3
B
295 299Right-handed 310
Helix 31
AD4
B
301 305Right-handed 310
Helix 32
AD5
B
316 327Right-handed alpha
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There are 3 sheets in PDB entry 9VK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
150 155parallel
Strand 3
A
104 107parallel
Strand 4
A
67 70parallel
Strand 5
A
42 47parallel
Strand 6
A
286 291parallel
Strand 7
A
257 265parallel
Strand 8
A
234 235parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
150 155parallel
Strand 3
A
193 198parallel
Strand 4
A
228 231parallel
Strand 5
A
257 265parallel
Strand 6
A
234 235parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
257 265parallel
Strand 3
B
286 291parallel
Strand 4
B
42 47parallel
Strand 5
B
67 70parallel
Strand 6
B
104 111parallel
Strand 7
B
150 155parallel
Strand 8
B
193 198parallel
Strand 9
B
228 231parallel
Strand 10
B
257 265parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il