Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VKG entry

There are 2 chains in PDB entry 9VKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19ARG 1091
C
 ARG 27TYR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9VKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 65Right-handed alpha
Helix 2
AA2
A
66 82Right-handed alpha
Helix 3
AA3
A
88 121Right-handed alpha
Helix 4
AA4
A
139 141Right-handed 310
Helix 5
AA5
A
175 180Right-handed alpha
Helix 6
AA6
A
190 194Right-handed 310
Helix 7
AA7
A
199 204Right-handed alpha
Helix 8
AA8
A
240 242Right-handed 310
Helix 9
AA9
A
268 273Right-handed alpha
Helix 10
AB1
A
282 314Right-handed alpha
Helix 11
AB2
A
328 333Right-handed alpha
Helix 12
AB3
A
335 352Right-handed alpha
Helix 13
AB4
A
353 355Right-handed 310
Helix 14
AB5
A
356 371Right-handed alpha
Helix 15
AB6
A
371 377Right-handed alpha
Helix 16
AB7
A
378 381Right-handed 310
Helix 17
AB8
A
397 402Right-handed 310
Helix 18
AB9
A
655 666Right-handed alpha
Helix 19
AC1
A
677 688Right-handed alpha
Helix 20
AC2
A
707 721Right-handed alpha
Helix 21
AC3
A
753 762Right-handed alpha
Helix 22
AC4
A
770 781Right-handed alpha
Helix 23
AC5
A
791 804Right-handed alpha
Helix 24
AC6
A
817 819Right-handed 310
Helix 25
AC7
A
820 827Right-handed alpha
Helix 26
AC8
A
839 845Right-handed alpha
Helix 27
AC9
A
851 853Right-handed 310
Helix 28
AD1
A
854 861Right-handed alpha
Helix 29
AD2
A
861 891Right-handed alpha
Helix 30
AD3
A
892 894Right-handed 310
Helix 31
AD4
A
904 911Right-handed alpha
Helix 32
AD5
A
917 927Right-handed alpha
Helix 33
AD6
A
931 938Right-handed alpha
Helix 34
AD7
A
939 946Right-handed 310
Helix 35
AD8
A
948 951Right-handed 310
Helix 36
AD9
A
952 978Right-handed alpha
Helix 37
AE1
A
991 1015Right-handed alpha
Helix 38
AE2
A
1019 1041Right-handed alpha
Helix 39
AE3
A
1055 1061Right-handed alpha
Helix 40
AE4
A
1063 1089Right-handed alpha
Helix 41
AE5
C
46 51Right-handed alpha
Helix 42
AE6
C
52 74Right-handed alpha
Helix 43
AE7
C
91 95Right-handed 310
Helix 44
AE8
C
131 136Right-handed alpha
Helix 45
AE9
C
139 144Right-handed alpha
Helix 46
AF1
C
146 152Right-handed alpha
Helix 47
AF2
C
154 158Right-handed 310
Helix 48
AF3
C
172 177Right-handed alpha
Helix 49
AF4
C
206 212Right-handed alpha
Helix 50
AF5
C
222 227Right-handed alpha
Helix 51
AF6
C
239 243Right-handed 310
Helix 52
AF7
C
246 250Right-handed 310
Helix 53
AF8
C
254 262Right-handed alpha
Helix 54
AF9
C
323 348Right-handed alpha
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There are 7 sheets in PDB entry 9VKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
206 211anti-parallel
Strand 3
A
223 228anti-parallel
Strand 4
A
235 239anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
158 164anti-parallel
Strand 6
A
244 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
250 252anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
847 849anti-parallel
Strand 3
A
829 833parallel
Strand 4
A
811 815parallel
Strand 5
A
405 408parallel
Strand 6
A
669 673parallel
Strand 7
A
784 788parallel
Strand 8
A
747 752parallel
Strand 9
A
696 700parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 81first strand
Strand 2
C
307 314anti-parallel
Strand 3
C
118 125anti-parallel
Strand 4
C
269 276anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 110first strand
Strand 2
C
289 297anti-parallel
Strand 3
C
182 188anti-parallel
Strand 4
C
194 196anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
166 167anti-parallel
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