Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VKI entry

There are 2 chains in PDB entry 9VKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 244
B
 SER 2LEU 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9VKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
42 48Right-handed alpha
Helix 3
AA3
A
59 71Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
88 98Right-handed alpha
Helix 6
AA6
A
110 119Right-handed alpha
Helix 7
AA7
A
148 170Right-handed alpha
Helix 8
AA8
A
179 184Right-handed alpha
Helix 9
AA9
A
186 195Right-handed alpha
Helix 10
AB1
A
214 219Right-handed 310
Helix 11
AB2
A
220 235Right-handed alpha
Helix 12
AB3
A
236 240Right-handed 310
Helix 13
AB4
B
15 25Right-handed alpha
Helix 14
AB5
B
49 54Right-handed alpha
Helix 15
AB6
B
59 71Right-handed alpha
Helix 16
AB7
B
84 87Right-handed 310
Helix 17
AB8
B
88 98Right-handed alpha
Helix 18
AB9
B
110 117Right-handed alpha
Helix 19
AC1
B
148 170Right-handed alpha
Helix 20
AC2
B
179 184Right-handed alpha
Helix 21
AC3
B
186 196Right-handed alpha
Helix 22
AC4
B
214 219Right-handed 310
Helix 23
AC5
B
223 235Right-handed alpha
Helix 24
AC6
B
236 240Right-handed 310
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There are 2 sheets in PDB entry 9VKI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
78 83parallel
Strand 3
A
4 9parallel
Strand 4
A
101 107parallel
Strand 5
A
174 178parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
78 83parallel
Strand 3
B
4 9parallel
Strand 4
B
102 107parallel
Strand 5
B
174 178parallel
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