Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VKO entry

There are 4 chains in PDB entry 9VKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 78SER 372
B
 LEU 78SER 372
C
 LEU 78SER 372
D
 LEU 78SER 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 9VKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 103Right-handed alpha
Helix 2
AA2
A
107 119Right-handed alpha
Helix 3
AA3
A
121 135Right-handed alpha
Helix 4
AA4
A
139 156Right-handed alpha
Helix 5
AA5
A
158 168Right-handed alpha
Helix 6
AA6
A
168 180Right-handed alpha
Helix 7
AA7
A
182 195Right-handed alpha
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
215 232Right-handed alpha
Helix 10
AB1
A
239 270Right-handed alpha
Helix 11
AB2
A
271 277Right-handed alpha
Helix 12
AB3
A
279 293Right-handed alpha
Helix 13
AB4
A
296 306Right-handed alpha
Helix 14
AB5
A
307 312Right-handed 310
Helix 15
AB6
A
313 329Right-handed alpha
Helix 16
AB7
A
332 336Right-handed 310
Helix 17
AB8
A
340 354Right-handed alpha
Helix 18
AB9
A
355 372Right-handed alpha
Helix 19
AC1
B
89 103Right-handed alpha
Helix 20
AC2
B
107 119Right-handed alpha
Helix 21
AC3
B
121 135Right-handed alpha
Helix 22
AC4
B
139 156Right-handed alpha
Helix 23
AC5
B
158 168Right-handed alpha
Helix 24
AC6
B
168 180Right-handed alpha
Helix 25
AC7
B
182 195Right-handed alpha
Helix 26
AC8
B
199 212Right-handed alpha
Helix 27
AC9
B
215 232Right-handed alpha
Helix 28
AD1
B
239 269Right-handed alpha
Helix 29
AD2
B
270 277Right-handed alpha
Helix 30
AD3
B
279 291Right-handed alpha
Helix 31
AD4
B
293 295Right-handed 310
Helix 32
AD5
B
296 306Right-handed alpha
Helix 33
AD6
B
313 331Right-handed alpha
Helix 34
AD7
B
332 336Right-handed 310
Helix 35
AD8
B
340 372Right-handed alpha
Helix 36
AD9
C
89 103Right-handed alpha
Helix 37
AE1
C
107 119Right-handed alpha
Helix 38
AE2
C
121 135Right-handed alpha
Helix 39
AE3
C
139 156Right-handed alpha
Helix 40
AE4
C
158 168Right-handed alpha
Helix 41
AE5
C
168 180Right-handed alpha
Helix 42
AE6
C
182 195Right-handed alpha
Helix 43
AE7
C
199 211Right-handed alpha
Helix 44
AE8
C
215 232Right-handed alpha
Helix 45
AE9
C
239 270Right-handed alpha
Helix 46
AF1
C
271 277Right-handed alpha
Helix 47
AF2
C
279 293Right-handed alpha
Helix 48
AF3
C
296 306Right-handed alpha
Helix 49
AF4
C
307 312Right-handed 310
Helix 50
AF5
C
313 329Right-handed alpha
Helix 51
AF6
C
332 336Right-handed 310
Helix 52
AF7
C
340 354Right-handed alpha
Helix 53
AF8
C
355 372Right-handed alpha
Helix 54
AF9
D
89 103Right-handed alpha
Helix 55
AG1
D
107 119Right-handed alpha
Helix 56
AG2
D
121 135Right-handed alpha
Helix 57
AG3
D
139 156Right-handed alpha
Helix 58
AG4
D
158 168Right-handed alpha
Helix 59
AG5
D
168 180Right-handed alpha
Helix 60
AG6
D
182 195Right-handed alpha
Helix 61
AG7
D
199 212Right-handed alpha
Helix 62
AG8
D
215 232Right-handed alpha
Helix 63
AG9
D
239 269Right-handed alpha
Helix 64
AH1
D
270 277Right-handed alpha
Helix 65
AH2
D
279 291Right-handed alpha
Helix 66
AH3
D
293 295Right-handed 310
Helix 67
AH4
D
296 306Right-handed alpha
Helix 68
AH5
D
313 331Right-handed alpha
Helix 69
AH6
D
332 336Right-handed 310
Helix 70
AH7
D
340 372Right-handed alpha
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There are no sheets in PDB entry 9VKO
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