Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VKP entry

There are 10 chains in PDB entry 9VKP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLY 523
C	THR 2	VAL 521
D	LYS 8	LEU 472
E	THR 9	GLY 473
F	THR 9	ALA 474
G	GLY 2	GLY 307
H	MET 1	VAL 121
b	TYR 89	LEU 168
d	LYS 66	PRO 447
A	LEU 4	ALA 545

There are166 helices in PDB entry 9VKP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	22	Right-handed alpha
Helix 2	AA2	B	103	107	Right-handed 310
Helix 3	AA3	B	153	160	Right-handed alpha
Helix 4	AA4	B	177	188	Right-handed alpha
Helix 5	AA5	B	189	196	Right-handed alpha
Helix 6	AA6	B	212	225	Right-handed alpha
Helix 7	AA7	B	226	230	Right-handed 310
Helix 8	AA8	B	242	262	Right-handed alpha
Helix 9	AA9	B	273	288	Right-handed alpha
Helix 10	AB1	B	293	297	Right-handed 310
Helix 11	AB2	B	300	310	Right-handed alpha
Helix 12	AB3	B	316	320	Right-handed 310
Helix 13	AB4	B	339	349	Right-handed alpha
Helix 14	AB5	B	356	363	Right-handed alpha
Helix 15	AB6	B	377	382	Right-handed 310
Helix 16	AB7	B	383	390	Right-handed alpha
Helix 17	AB8	B	392	403	Right-handed alpha
Helix 18	AB9	B	414	431	Right-handed alpha
Helix 19	AC1	B	440	453	Right-handed alpha
Helix 20	AC2	B	463	478	Right-handed alpha
Helix 21	AC3	B	479	490	Right-handed alpha
Helix 22	AC4	B	493	509	Right-handed alpha
Helix 23	AC5	C	7	22	Right-handed alpha
Helix 24	AC6	C	103	107	Right-handed 310
Helix 25	AC7	C	153	158	Right-handed alpha
Helix 26	AC8	C	177	188	Right-handed alpha
Helix 27	AC9	C	189	196	Right-handed alpha
Helix 28	AD1	C	212	226	Right-handed alpha
Helix 29	AD2	C	227	230	Right-handed 310
Helix 30	AD3	C	242	262	Right-handed alpha
Helix 31	AD4	C	273	288	Right-handed alpha
Helix 32	AD5	C	293	297	Right-handed 310
Helix 33	AD6	C	300	310	Right-handed alpha
Helix 34	AD7	C	316	320	Right-handed 310
Helix 35	AD8	C	339	347	Right-handed alpha
Helix 36	AD9	C	356	363	Right-handed alpha
Helix 37	AE1	C	383	390	Right-handed alpha
Helix 38	AE2	C	392	402	Right-handed alpha
Helix 39	AE3	C	414	431	Right-handed alpha
Helix 40	AE4	C	440	453	Right-handed alpha
Helix 41	AE5	C	463	479	Right-handed alpha
Helix 42	AE6	C	479	490	Right-handed alpha
Helix 43	AE7	C	493	509	Right-handed alpha
Helix 44	AE8	D	43	47	Right-handed 310
Helix 45	AE9	D	92	96	Right-handed 310
Helix 46	AF1	D	127	131	Right-handed 310
Helix 47	AF2	D	142	148	Right-handed alpha
Helix 48	AF3	D	167	179	Right-handed alpha
Helix 49	AF4	D	194	208	Right-handed alpha
Helix 50	AF5	D	210	212	Right-handed 310
Helix 51	AF6	D	224	229	Right-handed alpha
Helix 52	AF7	D	230	245	Right-handed alpha
Helix 53	AF8	D	257	272	Right-handed alpha
Helix 54	AF9	D	276	280	Right-handed 310
Helix 55	AG1	D	283	293	Right-handed alpha
Helix 56	AG2	D	312	315	Right-handed 310
Helix 57	AG3	D	318	325	Right-handed alpha
Helix 58	AG4	D	326	328	Right-handed 310
Helix 59	AG5	D	335	340	Right-handed alpha
Helix 60	AG6	D	358	363	Right-handed alpha
Helix 61	AG7	D	364	383	Right-handed alpha
Helix 62	AG8	D	385	391	Right-handed alpha
Helix 63	AG9	D	396	413	Right-handed alpha
Helix 64	AH1	D	417	421	Right-handed 310
Helix 65	AH2	D	432	445	Right-handed alpha
Helix 66	AH3	D	452	457	Right-handed 310
Helix 67	AH4	D	461	472	Right-handed alpha
Helix 68	AH5	E	26	30	Right-handed 310
Helix 69	AH6	E	43	47	Right-handed 310
Helix 70	AH7	E	92	96	Right-handed 310
Helix 71	AH8	E	127	131	Right-handed 310
Helix 72	AH9	E	142	149	Right-handed alpha
Helix 73	AI1	E	166	179	Right-handed alpha
Helix 74	AI2	E	194	207	Right-handed alpha
Helix 75	AI3	E	210	212	Right-handed 310
Helix 76	AI4	E	224	229	Right-handed alpha
Helix 77	AI5	E	230	245	Right-handed alpha
Helix 78	AI6	E	257	272	Right-handed alpha
Helix 79	AI7	E	276	280	Right-handed 310
Helix 80	AI8	E	283	293	Right-handed alpha
Helix 81	AI9	E	312	315	Right-handed 310
Helix 82	AJ1	E	318	323	Right-handed alpha
Helix 83	AJ2	E	324	328	Right-handed 310
Helix 84	AJ3	E	335	340	Right-handed alpha
Helix 85	AJ4	E	358	363	Right-handed alpha
Helix 86	AJ5	E	364	383	Right-handed alpha
Helix 87	AJ6	E	383	390	Right-handed alpha
Helix 88	AJ7	E	391	395	Right-handed 310
Helix 89	AJ8	E	396	414	Right-handed alpha
Helix 90	AJ9	E	417	421	Right-handed 310
Helix 91	AK1	E	432	446	Right-handed alpha
Helix 92	AK2	E	452	456	Right-handed 310
Helix 93	AK3	E	461	472	Right-handed alpha
Helix 94	AK4	F	92	96	Right-handed 310
Helix 95	AK5	F	127	131	Right-handed 310
Helix 96	AK6	F	142	149	Right-handed alpha
Helix 97	AK7	F	166	182	Right-handed alpha
Helix 98	AK8	F	194	208	Right-handed alpha
Helix 99	AK9	F	210	212	Right-handed 310
Helix 100	AL1	F	224	229	Right-handed alpha
Helix 101	AL2	F	230	247	Right-handed alpha
Helix 102	AL3	F	256	272	Right-handed alpha
Helix 103	AL4	F	276	280	Right-handed 310
Helix 104	AL5	F	283	293	Right-handed alpha
Helix 105	AL6	F	311	315	Right-handed 310
Helix 106	AL7	F	318	325	Right-handed alpha
Helix 107	AL8	F	335	342	Right-handed alpha
Helix 108	AL9	F	363	383	Right-handed alpha
Helix 109	AM1	F	384	390	Right-handed alpha
Helix 110	AM2	F	396	412	Right-handed alpha
Helix 111	AM3	F	417	421	Right-handed 310
Helix 112	AM4	F	432	445	Right-handed alpha
Helix 113	AM5	F	453	457	Right-handed 310
Helix 114	AM6	F	461	472	Right-handed alpha
Helix 115	AM7	G	3	43	Right-handed alpha
Helix 116	AM8	G	43	59	Right-handed alpha
Helix 117	AM9	G	65	69	Right-handed 310
Helix 118	AN1	G	92	111	Right-handed alpha
Helix 119	AN2	G	120	130	Right-handed alpha
Helix 120	AN3	G	146	167	Right-handed alpha
Helix 121	AN4	G	226	307	Right-handed alpha
Helix 122	AN5	H	92	101	Right-handed alpha
Helix 123	AN6	H	103	117	Right-handed alpha
Helix 124	AN7	b	90	148	Right-handed alpha
Helix 125	AN8	b	151	165	Right-handed alpha
Helix 126	AN9	d	67	137	Right-handed alpha
Helix 127	AO1	d	139	156	Right-handed alpha
Helix 128	AO2	d	177	194	Right-handed alpha
Helix 129	AO3	d	198	219	Right-handed alpha
Helix 130	AO4	d	220	228	Right-handed alpha
Helix 131	AO5	d	234	243	Right-handed alpha
Helix 132	AO6	d	251	263	Right-handed alpha
Helix 133	AO7	d	269	291	Right-handed alpha
Helix 134	AO8	d	293	310	Right-handed alpha
Helix 135	AO9	d	311	320	Right-handed alpha
Helix 136	AP1	d	324	337	Right-handed alpha
Helix 137	AP2	d	341	354	Right-handed alpha
Helix 138	AP3	d	359	377	Right-handed alpha
Helix 139	AP4	d	389	405	Right-handed alpha
Helix 140	AP5	d	416	419	Right-handed 310
Helix 141	AP6	d	434	445	Right-handed alpha
Helix 142	AP7	A	7	21	Right-handed alpha
Helix 143	AP8	A	59	61	Right-handed 310
Helix 144	AP9	A	103	107	Right-handed 310
Helix 145	AQ1	A	153	158	Right-handed alpha
Helix 146	AQ2	A	177	188	Right-handed alpha
Helix 147	AQ3	A	189	196	Right-handed alpha
Helix 148	AQ4	A	212	226	Right-handed alpha
Helix 149	AQ5	A	227	230	Right-handed 310
Helix 150	AQ6	A	242	262	Right-handed alpha
Helix 151	AQ7	A	273	288	Right-handed alpha
Helix 152	AQ8	A	293	297	Right-handed 310
Helix 153	AQ9	A	298	300	Right-handed 310
Helix 154	AR1	A	301	310	Right-handed alpha
Helix 155	AR2	A	316	320	Right-handed 310
Helix 156	AR3	A	339	347	Right-handed alpha
Helix 157	AR4	A	356	362	Right-handed alpha
Helix 158	AR5	A	377	382	Right-handed 310
Helix 159	AR6	A	383	390	Right-handed alpha
Helix 160	AR7	A	392	407	Right-handed alpha
Helix 161	AR8	A	414	431	Right-handed alpha
Helix 162	AR9	A	440	453	Right-handed alpha
Helix 163	AS1	A	460	462	Right-handed 310
Helix 164	AS2	A	463	478	Right-handed alpha
Helix 165	AS3	A	479	490	Right-handed alpha
Helix 166	AS4	A	493	509	Right-handed alpha

There are 26 sheets in PDB entry 9VKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	31	38	anti-parallel
Strand 5	B	41	45	anti-parallel
Strand 6	B	73	79	anti-parallel
Strand 7	B	63	69	anti-parallel
Strand 8	F	11	17	anti-parallel
Strand 9	F	79	82	anti-parallel
Strand 10	F	36	38	anti-parallel
Strand 11	F	51	57	anti-parallel
Strand 12	F	62	67	anti-parallel
Strand 13	F	20	24	anti-parallel
Strand 14	F	11	17	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	128	131	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	232	237	parallel
Strand 3	B	203	209	parallel
Strand 4	B	266	272	parallel
Strand 5	B	323	331	parallel
Strand 6	B	168	172	parallel
Strand 7	B	351	355	parallel
Strand 8	B	374	375	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	69	first strand
Strand 2	C	54	57	anti-parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	31	38	anti-parallel
Strand 5	C	41	45	anti-parallel
Strand 6	C	74	79	anti-parallel
Strand 7	C	63	69	anti-parallel
Strand 8	D	11	17	anti-parallel
Strand 9	D	79	82	anti-parallel
Strand 10	D	36	41	anti-parallel
Strand 11	D	48	59	anti-parallel
Strand 12	D	62	67	anti-parallel
Strand 13	D	20	24	anti-parallel
Strand 14	D	11	17	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	128	131	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	232	237	parallel
Strand 3	C	203	209	parallel
Strand 4	C	266	272	parallel
Strand 5	C	323	331	parallel
Strand 6	C	168	172	parallel
Strand 7	C	351	355	parallel
Strand 8	C	374	375	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	117	120	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	214	219	parallel
Strand 3	D	185	191	parallel
Strand 4	D	250	255	parallel
Strand 5	D	303	310	parallel
Strand 6	D	156	161	parallel
Strand 7	D	330	333	parallel
Strand 8	D	353	354	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	151	152	anti-parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	17	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	62	67	anti-parallel
Strand 4	E	48	57	anti-parallel
Strand 5	E	36	41	anti-parallel
Strand 6	E	79	82	anti-parallel
Strand 7	E	11	17	anti-parallel
Strand 8	A	63	69	anti-parallel
Strand 9	A	74	79	anti-parallel
Strand 10	A	41	45	anti-parallel
Strand 11	A	32	38	anti-parallel
Strand 12	A	90	97	anti-parallel
Strand 13	A	54	57	anti-parallel
Strand 14	A	63	69	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	91	first strand
Strand 2	E	117	120	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	214	220	parallel
Strand 3	E	185	193	parallel
Strand 4	E	250	255	parallel
Strand 5	E	303	310	parallel
Strand 6	E	156	161	parallel
Strand 7	E	330	333	parallel
Strand 8	E	353	354	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	138	first strand
Strand 2	E	151	152	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	91	first strand
Strand 2	F	117	120	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	214	220	parallel
Strand 3	F	185	193	parallel
Strand 4	F	250	255	parallel
Strand 5	F	301	308	parallel
Strand 6	F	297	298	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	214	220	parallel
Strand 3	F	185	193	parallel
Strand 4	F	250	255	parallel
Strand 5	F	301	308	parallel
Strand 6	F	156	161	parallel
Strand 7	F	330	334	parallel
Strand 8	F	353	354	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	F	151	152	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	138	first strand
Strand 2	G	113	119	parallel
Strand 3	G	76	82	parallel
Strand 4	G	183	192	parallel
Strand 5	G	195	210	anti-parallel
Strand 6	A	535	541	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	20	first strand
Strand 2	H	4	9	anti-parallel
Strand 3	H	77	81	parallel
Strand 4	H	68	71	anti-parallel
Strand 5	H	42	44	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	23	first strand
Strand 2	H	53	54	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	65	first strand
Strand 2	H	84	85	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	379	380	first strand
Strand 2	d	409	410	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	383	384	first strand
Strand 2	d	413	414	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	423	426	first strand
Strand 2	d	429	432	anti-parallel
Strand 3	A	28	30	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	128	131	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	232	237	parallel
Strand 3	A	203	209	parallel
Strand 4	A	266	272	parallel
Strand 5	A	323	331	parallel
Strand 6	A	169	172	parallel
Strand 7	A	351	355	parallel
Strand 8	A	374	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VKP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKP