Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VKQ entry

There are 10 chains in PDB entry 9VKQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 11	VAL 521
C	SER 7	GLY 523
D	THR 9	ALA 474
E	LYS 8	LEU 472
F	THR 9	GLY 473
G	GLY 2	ALA 306
H	MET 1	VAL 121
b	TYR 89	LEU 168
d	LYS 66	PRO 447
B	SER 7	ALA 545

There are156 helices in PDB entry 9VKQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	21	Right-handed alpha
Helix 2	AA2	A	103	107	Right-handed 310
Helix 3	AA3	A	138	142	Right-handed 310
Helix 4	AA4	A	153	158	Right-handed alpha
Helix 5	AA5	A	177	188	Right-handed alpha
Helix 6	AA6	A	189	194	Right-handed alpha
Helix 7	AA7	A	212	226	Right-handed alpha
Helix 8	AA8	A	227	230	Right-handed 310
Helix 9	AA9	A	244	262	Right-handed alpha
Helix 10	AB1	A	276	288	Right-handed alpha
Helix 11	AB2	A	293	297	Right-handed 310
Helix 12	AB3	A	298	300	Right-handed 310
Helix 13	AB4	A	301	310	Right-handed alpha
Helix 14	AB5	A	341	346	Right-handed alpha
Helix 15	AB6	A	356	363	Right-handed alpha
Helix 16	AB7	A	383	391	Right-handed alpha
Helix 17	AB8	A	392	401	Right-handed alpha
Helix 18	AB9	A	414	431	Right-handed alpha
Helix 19	AC1	A	440	450	Right-handed alpha
Helix 20	AC2	A	463	479	Right-handed alpha
Helix 21	AC3	A	479	490	Right-handed alpha
Helix 22	AC4	A	493	510	Right-handed alpha
Helix 23	AC5	C	9	21	Right-handed alpha
Helix 24	AC6	C	103	107	Right-handed 310
Helix 25	AC7	C	154	159	Right-handed alpha
Helix 26	AC8	C	177	189	Right-handed alpha
Helix 27	AC9	C	190	196	Right-handed alpha
Helix 28	AD1	C	212	226	Right-handed alpha
Helix 29	AD2	C	228	230	Right-handed 310
Helix 30	AD3	C	242	263	Right-handed alpha
Helix 31	AD4	C	273	288	Right-handed alpha
Helix 32	AD5	C	293	297	Right-handed 310
Helix 33	AD6	C	300	309	Right-handed alpha
Helix 34	AD7	C	339	349	Right-handed alpha
Helix 35	AD8	C	356	361	Right-handed alpha
Helix 36	AD9	C	377	382	Right-handed 310
Helix 37	AE1	C	383	390	Right-handed alpha
Helix 38	AE2	C	392	403	Right-handed alpha
Helix 39	AE3	C	414	431	Right-handed alpha
Helix 40	AE4	C	440	453	Right-handed alpha
Helix 41	AE5	C	460	462	Right-handed 310
Helix 42	AE6	C	463	479	Right-handed alpha
Helix 43	AE7	C	479	490	Right-handed alpha
Helix 44	AE8	C	493	511	Right-handed alpha
Helix 45	AE9	D	92	96	Right-handed 310
Helix 46	AF1	D	127	131	Right-handed 310
Helix 47	AF2	D	144	149	Right-handed alpha
Helix 48	AF3	D	166	181	Right-handed alpha
Helix 49	AF4	D	194	208	Right-handed alpha
Helix 50	AF5	D	210	212	Right-handed 310
Helix 51	AF6	D	226	245	Right-handed alpha
Helix 52	AF7	D	257	272	Right-handed alpha
Helix 53	AF8	D	276	280	Right-handed 310
Helix 54	AF9	D	283	293	Right-handed alpha
Helix 55	AG1	D	311	315	Right-handed 310
Helix 56	AG2	D	318	325	Right-handed alpha
Helix 57	AG3	D	335	342	Right-handed alpha
Helix 58	AG4	D	358	363	Right-handed alpha
Helix 59	AG5	D	363	383	Right-handed alpha
Helix 60	AG6	D	396	413	Right-handed alpha
Helix 61	AG7	D	417	423	Right-handed 310
Helix 62	AG8	D	432	445	Right-handed alpha
Helix 63	AG9	D	461	473	Right-handed alpha
Helix 64	AH1	E	127	131	Right-handed 310
Helix 65	AH2	E	142	148	Right-handed alpha
Helix 66	AH3	E	167	179	Right-handed alpha
Helix 67	AH4	E	194	207	Right-handed alpha
Helix 68	AH5	E	210	212	Right-handed 310
Helix 69	AH6	E	224	230	Right-handed alpha
Helix 70	AH7	E	231	245	Right-handed alpha
Helix 71	AH8	E	257	272	Right-handed alpha
Helix 72	AH9	E	276	280	Right-handed 310
Helix 73	AI1	E	284	293	Right-handed alpha
Helix 74	AI2	E	311	315	Right-handed 310
Helix 75	AI3	E	318	325	Right-handed alpha
Helix 76	AI4	E	335	341	Right-handed alpha
Helix 77	AI5	E	363	382	Right-handed alpha
Helix 78	AI6	E	383	391	Right-handed alpha
Helix 79	AI7	E	392	395	Right-handed 310
Helix 80	AI8	E	396	413	Right-handed alpha
Helix 81	AI9	E	417	421	Right-handed 310
Helix 82	AJ1	E	432	445	Right-handed alpha
Helix 83	AJ2	E	452	457	Right-handed 310
Helix 84	AJ3	E	461	472	Right-handed alpha
Helix 85	AJ4	F	92	96	Right-handed 310
Helix 86	AJ5	F	142	149	Right-handed alpha
Helix 87	AJ6	F	166	179	Right-handed alpha
Helix 88	AJ7	F	180	182	Right-handed 310
Helix 89	AJ8	F	194	208	Right-handed alpha
Helix 90	AJ9	F	210	214	Right-handed 310
Helix 91	AK1	F	224	229	Right-handed 310
Helix 92	AK2	F	230	246	Right-handed alpha
Helix 93	AK3	F	257	272	Right-handed alpha
Helix 94	AK4	F	276	280	Right-handed 310
Helix 95	AK5	F	283	293	Right-handed alpha
Helix 96	AK6	F	311	315	Right-handed 310
Helix 97	AK7	F	318	323	Right-handed alpha
Helix 98	AK8	F	324	328	Right-handed 310
Helix 99	AK9	F	335	341	Right-handed alpha
Helix 100	AL1	F	363	383	Right-handed alpha
Helix 101	AL2	F	383	390	Right-handed alpha
Helix 102	AL3	F	391	395	Right-handed 310
Helix 103	AL4	F	396	413	Right-handed alpha
Helix 104	AL5	F	432	446	Right-handed alpha
Helix 105	AL6	F	452	456	Right-handed 310
Helix 106	AL7	F	462	472	Right-handed alpha
Helix 107	AL8	G	3	43	Right-handed alpha
Helix 108	AL9	G	44	58	Right-handed alpha
Helix 109	AM1	G	91	110	Right-handed alpha
Helix 110	AM2	G	120	130	Right-handed alpha
Helix 111	AM3	G	146	167	Right-handed alpha
Helix 112	AM4	G	226	306	Right-handed alpha
Helix 113	AM5	H	91	100	Right-handed alpha
Helix 114	AM6	H	105	113	Right-handed alpha
Helix 115	AM7	b	90	102	Right-handed alpha
Helix 116	AM8	b	103	145	Right-handed alpha
Helix 117	AM9	b	151	165	Right-handed alpha
Helix 118	AN1	d	67	136	Right-handed alpha
Helix 119	AN2	d	141	154	Right-handed alpha
Helix 120	AN3	d	182	194	Right-handed alpha
Helix 121	AN4	d	198	211	Right-handed alpha
Helix 122	AN5	d	212	219	Right-handed alpha
Helix 123	AN6	d	220	228	Right-handed alpha
Helix 124	AN7	d	234	246	Right-handed alpha
Helix 125	AN8	d	251	263	Right-handed alpha
Helix 126	AN9	d	268	291	Right-handed alpha
Helix 127	AO1	d	293	309	Right-handed alpha
Helix 128	AO2	d	311	319	Right-handed alpha
Helix 129	AO3	d	324	333	Right-handed alpha
Helix 130	AO4	d	341	354	Right-handed alpha
Helix 131	AO5	d	359	375	Right-handed alpha
Helix 132	AO6	d	389	404	Right-handed alpha
Helix 133	AO7	d	434	445	Right-handed alpha
Helix 134	AO8	B	8	19	Right-handed alpha
Helix 135	AO9	B	138	142	Right-handed 310
Helix 136	AP1	B	153	158	Right-handed alpha
Helix 137	AP2	B	177	188	Right-handed alpha
Helix 138	AP3	B	189	196	Right-handed alpha
Helix 139	AP4	B	212	227	Right-handed alpha
Helix 140	AP5	B	228	230	Right-handed 310
Helix 141	AP6	B	242	264	Right-handed alpha
Helix 142	AP7	B	274	288	Right-handed alpha
Helix 143	AP8	B	293	297	Right-handed 310
Helix 144	AP9	B	301	310	Right-handed alpha
Helix 145	AQ1	B	316	320	Right-handed 310
Helix 146	AQ2	B	339	347	Right-handed alpha
Helix 147	AQ3	B	356	362	Right-handed alpha
Helix 148	AQ4	B	377	382	Right-handed 310
Helix 149	AQ5	B	383	390	Right-handed alpha
Helix 150	AQ6	B	392	407	Right-handed alpha
Helix 151	AQ7	B	420	431	Right-handed alpha
Helix 152	AQ8	B	440	453	Right-handed alpha
Helix 153	AQ9	B	460	462	Right-handed 310
Helix 154	AR1	B	463	478	Right-handed alpha
Helix 155	AR2	B	480	490	Right-handed alpha
Helix 156	AR3	B	493	510	Right-handed alpha

There are 32 sheets in PDB entry 9VKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	d	429	431	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	37	41	anti-parallel
Strand 3	E	79	82	anti-parallel
Strand 4	E	11	17	anti-parallel
Strand 5	A	62	69	anti-parallel
Strand 6	E	20	24	first strand
Strand 7	E	63	67	anti-parallel
Strand 8	E	52	57	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	37	41	anti-parallel
Strand 3	E	79	82	anti-parallel
Strand 4	E	11	17	anti-parallel
Strand 5	A	74	79	first strand
Strand 6	A	41	45	anti-parallel
Strand 7	A	32	36	anti-parallel
Strand 8	A	90	93	anti-parallel
Strand 9	A	55	58	anti-parallel
Strand 10	A	62	69	anti-parallel
Strand 11	E	20	24	first strand
Strand 12	E	63	67	anti-parallel
Strand 13	E	52	57	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	128	131	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	232	237	parallel
Strand 3	A	202	209	parallel
Strand 4	A	266	272	parallel
Strand 5	A	323	331	parallel
Strand 6	A	168	172	parallel
Strand 7	A	351	355	parallel
Strand 8	A	368	369	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	162	163	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	D	11	17	anti-parallel
Strand 4	C	74	78	first strand
Strand 5	C	41	45	anti-parallel
Strand 6	C	32	36	anti-parallel
Strand 7	C	90	91	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	D	79	82	first strand
Strand 4	D	36	41	anti-parallel
Strand 5	D	48	57	anti-parallel
Strand 6	D	62	67	anti-parallel
Strand 7	D	20	24	anti-parallel
Strand 8	D	11	17	anti-parallel
Strand 9	C	74	78	first strand
Strand 10	C	41	45	anti-parallel
Strand 11	C	32	36	anti-parallel
Strand 12	C	90	91	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	128	131	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	232	237	parallel
Strand 3	C	202	209	parallel
Strand 4	C	266	272	parallel
Strand 5	C	323	326	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	168	172	parallel
Strand 3	C	351	354	parallel
Strand 4	C	374	375	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	117	120	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	214	220	parallel
Strand 3	D	185	193	parallel
Strand 4	D	250	254	parallel
Strand 5	D	301	308	parallel
Strand 6	D	297	298	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	214	220	parallel
Strand 3	D	185	193	parallel
Strand 4	D	250	254	parallel
Strand 5	D	301	308	parallel
Strand 6	D	156	160	parallel
Strand 7	D	330	333	parallel
Strand 8	D	353	354	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	151	152	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	90	first strand
Strand 2	E	118	120	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	214	219	parallel
Strand 3	E	185	191	parallel
Strand 4	E	249	254	parallel
Strand 5	E	302	306	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	138	first strand
Strand 2	E	151	152	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	160	first strand
Strand 2	E	330	333	parallel
Strand 3	E	353	354	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	16	first strand
Strand 2	F	20	24	anti-parallel
Strand 3	F	62	67	anti-parallel
Strand 4	F	51	57	anti-parallel
Strand 5	F	36	38	anti-parallel
Strand 6	F	79	82	anti-parallel
Strand 7	F	11	16	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	91	first strand
Strand 2	F	117	120	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	F	151	152	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	220	first strand
Strand 2	F	185	193	parallel
Strand 3	F	250	254	parallel
Strand 4	F	303	306	parallel
Strand 5	F	156	158	parallel
Strand 6	F	330	331	parallel
Strand 7	F	353	354	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	138	first strand
Strand 2	G	113	119	parallel
Strand 3	G	76	82	parallel
Strand 4	G	183	189	parallel
Strand 5	G	197	202	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	207	211	first strand
Strand 2	B	538	542	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	14	19	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	44	first strand
Strand 2	H	69	71	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	65	first strand
Strand 2	H	84	85	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	58	first strand
Strand 2	B	62	69	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	32	38	anti-parallel
Strand 6	B	90	91	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	128	131	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	232	238	parallel
Strand 3	B	203	211	parallel
Strand 4	B	266	272	parallel
Strand 5	B	323	327	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	169	172	parallel
Strand 3	B	351	355	parallel
Strand 4	B	374	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VKQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKQ