Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VKR entry

There are 10 chains in PDB entry 9VKR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 6	GLY 523
B	MET 1	GLY 523
C	THR 2	ALA 545
D	ASN 7	LEU 476
E	LYS 8	LEU 476
F	THR 9	LEU 476
G	GLY 2	GLY 307
H	MET 1	VAL 121
b	TYR 89	LEU 168
d	LYS 66	PRO 447

There are167 helices in PDB entry 9VKR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	21	Right-handed alpha
Helix 2	AA2	A	103	107	Right-handed 310
Helix 3	AA3	A	153	160	Right-handed alpha
Helix 4	AA4	A	177	188	Right-handed alpha
Helix 5	AA5	A	189	194	Right-handed alpha
Helix 6	AA6	A	212	226	Right-handed alpha
Helix 7	AA7	A	227	230	Right-handed 310
Helix 8	AA8	A	242	264	Right-handed alpha
Helix 9	AA9	A	273	288	Right-handed alpha
Helix 10	AB1	A	293	297	Right-handed 310
Helix 11	AB2	A	300	310	Right-handed alpha
Helix 12	AB3	A	339	349	Right-handed alpha
Helix 13	AB4	A	356	362	Right-handed alpha
Helix 14	AB5	A	377	382	Right-handed 310
Helix 15	AB6	A	383	390	Right-handed alpha
Helix 16	AB7	A	392	404	Right-handed alpha
Helix 17	AB8	A	409	413	Right-handed 310
Helix 18	AB9	A	414	431	Right-handed alpha
Helix 19	AC1	A	440	453	Right-handed alpha
Helix 20	AC2	A	460	462	Right-handed 310
Helix 21	AC3	A	463	478	Right-handed alpha
Helix 22	AC4	A	479	490	Right-handed alpha
Helix 23	AC5	A	493	508	Right-handed alpha
Helix 24	AC6	A	509	511	Right-handed 310
Helix 25	AC7	B	7	21	Right-handed alpha
Helix 26	AC8	B	103	107	Right-handed 310
Helix 27	AC9	B	138	142	Right-handed 310
Helix 28	AD1	B	153	158	Right-handed alpha
Helix 29	AD2	B	177	188	Right-handed alpha
Helix 30	AD3	B	189	196	Right-handed alpha
Helix 31	AD4	B	212	226	Right-handed alpha
Helix 32	AD5	B	227	230	Right-handed 310
Helix 33	AD6	B	242	264	Right-handed alpha
Helix 34	AD7	B	273	288	Right-handed alpha
Helix 35	AD8	B	293	297	Right-handed 310
Helix 36	AD9	B	300	310	Right-handed alpha
Helix 37	AE1	B	316	320	Right-handed 310
Helix 38	AE2	B	339	347	Right-handed alpha
Helix 39	AE3	B	356	362	Right-handed alpha
Helix 40	AE4	B	377	381	Right-handed 310
Helix 41	AE5	B	383	390	Right-handed alpha
Helix 42	AE6	B	392	404	Right-handed alpha
Helix 43	AE7	B	414	431	Right-handed alpha
Helix 44	AE8	B	440	453	Right-handed alpha
Helix 45	AE9	B	460	462	Right-handed 310
Helix 46	AF1	B	463	479	Right-handed alpha
Helix 47	AF2	B	479	490	Right-handed alpha
Helix 48	AF3	B	493	508	Right-handed alpha
Helix 49	AF4	C	7	22	Right-handed alpha
Helix 50	AF5	C	103	107	Right-handed 310
Helix 51	AF6	C	138	142	Right-handed 310
Helix 52	AF7	C	153	158	Right-handed alpha
Helix 53	AF8	C	177	188	Right-handed alpha
Helix 54	AF9	C	189	194	Right-handed alpha
Helix 55	AG1	C	212	226	Right-handed alpha
Helix 56	AG2	C	227	230	Right-handed 310
Helix 57	AG3	C	242	262	Right-handed alpha
Helix 58	AG4	C	273	288	Right-handed alpha
Helix 59	AG5	C	293	297	Right-handed 310
Helix 60	AG6	C	300	310	Right-handed alpha
Helix 61	AG7	C	339	347	Right-handed alpha
Helix 62	AG8	C	356	362	Right-handed alpha
Helix 63	AG9	C	377	382	Right-handed 310
Helix 64	AH1	C	383	390	Right-handed alpha
Helix 65	AH2	C	392	407	Right-handed alpha
Helix 66	AH3	C	414	431	Right-handed alpha
Helix 67	AH4	C	440	453	Right-handed alpha
Helix 68	AH5	C	460	462	Right-handed 310
Helix 69	AH6	C	463	478	Right-handed alpha
Helix 70	AH7	C	479	490	Right-handed alpha
Helix 71	AH8	C	493	509	Right-handed alpha
Helix 72	AH9	D	92	96	Right-handed 310
Helix 73	AI1	D	127	131	Right-handed 310
Helix 74	AI2	D	142	149	Right-handed alpha
Helix 75	AI3	D	166	179	Right-handed alpha
Helix 76	AI4	D	194	208	Right-handed alpha
Helix 77	AI5	D	210	212	Right-handed 310
Helix 78	AI6	D	224	246	Right-handed alpha
Helix 79	AI7	D	257	272	Right-handed alpha
Helix 80	AI8	D	276	280	Right-handed 310
Helix 81	AI9	D	283	293	Right-handed alpha
Helix 82	AJ1	D	312	315	Right-handed 310
Helix 83	AJ2	D	318	324	Right-handed alpha
Helix 84	AJ3	D	325	328	Right-handed 310
Helix 85	AJ4	D	335	341	Right-handed alpha
Helix 86	AJ5	D	358	363	Right-handed alpha
Helix 87	AJ6	D	363	390	Right-handed alpha
Helix 88	AJ7	D	391	395	Right-handed 310
Helix 89	AJ8	D	396	413	Right-handed alpha
Helix 90	AJ9	D	417	419	Right-handed 310
Helix 91	AK1	D	420	425	Right-handed alpha
Helix 92	AK2	D	432	446	Right-handed alpha
Helix 93	AK3	D	452	457	Right-handed 310
Helix 94	AK4	D	461	473	Right-handed alpha
Helix 95	AK5	E	92	96	Right-handed 310
Helix 96	AK6	E	127	131	Right-handed 310
Helix 97	AK7	E	142	148	Right-handed alpha
Helix 98	AK8	E	166	182	Right-handed alpha
Helix 99	AK9	E	194	208	Right-handed alpha
Helix 100	AL1	E	210	212	Right-handed 310
Helix 101	AL2	E	224	229	Right-handed alpha
Helix 102	AL3	E	230	245	Right-handed alpha
Helix 103	AL4	E	256	271	Right-handed alpha
Helix 104	AL5	E	276	280	Right-handed 310
Helix 105	AL6	E	283	293	Right-handed alpha
Helix 106	AL7	E	311	315	Right-handed 310
Helix 107	AL8	E	318	325	Right-handed alpha
Helix 108	AL9	E	335	340	Right-handed alpha
Helix 109	AM1	E	363	383	Right-handed alpha
Helix 110	AM2	E	384	390	Right-handed alpha
Helix 111	AM3	E	396	413	Right-handed alpha
Helix 112	AM4	E	417	423	Right-handed 310
Helix 113	AM5	E	432	446	Right-handed alpha
Helix 114	AM6	E	452	457	Right-handed 310
Helix 115	AM7	E	461	473	Right-handed alpha
Helix 116	AM8	F	92	96	Right-handed 310
Helix 117	AM9	F	127	131	Right-handed 310
Helix 118	AN1	F	142	149	Right-handed alpha
Helix 119	AN2	F	166	179	Right-handed alpha
Helix 120	AN3	F	194	208	Right-handed alpha
Helix 121	AN4	F	210	212	Right-handed 310
Helix 122	AN5	F	224	229	Right-handed alpha
Helix 123	AN6	F	230	245	Right-handed alpha
Helix 124	AN7	F	257	272	Right-handed alpha
Helix 125	AN8	F	276	280	Right-handed 310
Helix 126	AN9	F	283	293	Right-handed alpha
Helix 127	AO1	F	312	315	Right-handed 310
Helix 128	AO2	F	318	325	Right-handed alpha
Helix 129	AO3	F	326	328	Right-handed 310
Helix 130	AO4	F	335	340	Right-handed alpha
Helix 131	AO5	F	358	363	Right-handed alpha
Helix 132	AO6	F	363	383	Right-handed alpha
Helix 133	AO7	F	384	391	Right-handed alpha
Helix 134	AO8	F	396	413	Right-handed alpha
Helix 135	AO9	F	417	419	Right-handed 310
Helix 136	AP1	F	420	425	Right-handed alpha
Helix 137	AP2	F	432	446	Right-handed alpha
Helix 138	AP3	F	452	457	Right-handed 310
Helix 139	AP4	F	461	473	Right-handed alpha
Helix 140	AP5	G	3	60	Right-handed alpha
Helix 141	AP6	G	65	69	Right-handed 310
Helix 142	AP7	G	91	110	Right-handed alpha
Helix 143	AP8	G	120	130	Right-handed alpha
Helix 144	AP9	G	146	164	Right-handed alpha
Helix 145	AQ1	G	226	306	Right-handed alpha
Helix 146	AQ2	H	91	100	Right-handed alpha
Helix 147	AQ3	H	103	117	Right-handed alpha
Helix 148	AQ4	b	90	103	Right-handed alpha
Helix 149	AQ5	b	105	148	Right-handed alpha
Helix 150	AQ6	b	151	165	Right-handed alpha
Helix 151	AQ7	d	67	138	Right-handed alpha
Helix 152	AQ8	d	139	157	Right-handed alpha
Helix 153	AQ9	d	177	194	Right-handed alpha
Helix 154	AR1	d	195	197	Right-handed 310
Helix 155	AR2	d	198	219	Right-handed alpha
Helix 156	AR3	d	219	228	Right-handed alpha
Helix 157	AR4	d	235	247	Right-handed alpha
Helix 158	AR5	d	251	264	Right-handed alpha
Helix 159	AR6	d	268	292	Right-handed alpha
Helix 160	AR7	d	293	311	Right-handed alpha
Helix 161	AR8	d	311	319	Right-handed alpha
Helix 162	AR9	d	324	337	Right-handed alpha
Helix 163	AS1	d	341	354	Right-handed alpha
Helix 164	AS2	d	359	376	Right-handed alpha
Helix 165	AS3	d	389	405	Right-handed alpha
Helix 166	AS4	d	416	419	Right-handed 310
Helix 167	AS5	d	434	445	Right-handed alpha

There are 26 sheets in PDB entry 9VKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	d	429	432	anti-parallel
Strand 3	d	422	426	anti-parallel
Strand 4	d	379	384	anti-parallel
Strand 5	d	409	414	parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	69	first strand
Strand 2	A	54	57	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	32	38	anti-parallel
Strand 5	A	41	45	anti-parallel
Strand 6	A	73	79	anti-parallel
Strand 7	A	63	69	anti-parallel
Strand 8	E	11	17	anti-parallel
Strand 9	E	79	82	anti-parallel
Strand 10	E	36	41	anti-parallel
Strand 11	E	48	59	anti-parallel
Strand 12	E	62	67	anti-parallel
Strand 13	E	20	24	anti-parallel
Strand 14	E	11	17	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	128	131	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	232	237	parallel
Strand 3	A	203	209	parallel
Strand 4	A	266	271	parallel
Strand 5	A	323	331	parallel
Strand 6	A	168	172	parallel
Strand 7	A	351	355	parallel
Strand 8	A	374	375	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	31	38	anti-parallel
Strand 5	B	41	45	anti-parallel
Strand 6	B	73	79	anti-parallel
Strand 7	B	63	69	anti-parallel
Strand 8	F	11	17	anti-parallel
Strand 9	F	79	82	anti-parallel
Strand 10	F	36	41	anti-parallel
Strand 11	F	48	59	anti-parallel
Strand 12	F	62	67	anti-parallel
Strand 13	F	20	24	anti-parallel
Strand 14	F	11	17	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	128	131	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	232	237	parallel
Strand 3	B	203	209	parallel
Strand 4	B	266	272	parallel
Strand 5	B	323	331	parallel
Strand 6	B	169	172	parallel
Strand 7	B	351	355	parallel
Strand 8	B	374	375	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	162	163	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	38	first strand
Strand 2	C	41	45	anti-parallel
Strand 3	C	73	79	anti-parallel
Strand 4	C	63	69	anti-parallel
Strand 5	C	54	57	anti-parallel
Strand 6	C	90	97	anti-parallel
Strand 7	C	31	38	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	128	131	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	232	237	parallel
Strand 3	C	203	209	parallel
Strand 4	C	266	272	parallel
Strand 5	C	323	331	parallel
Strand 6	C	169	172	parallel
Strand 7	C	351	355	parallel
Strand 8	C	374	375	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	541	first strand
Strand 2	G	196	210	parallel
Strand 3	G	182	190	anti-parallel
Strand 4	G	77	82	parallel
Strand 5	G	115	119	parallel
Strand 6	G	136	138	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	17	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	62	67	anti-parallel
Strand 4	D	48	57	anti-parallel
Strand 5	D	36	41	anti-parallel
Strand 6	D	79	82	anti-parallel
Strand 7	D	11	17	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	117	120	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	214	220	parallel
Strand 3	D	185	193	parallel
Strand 4	D	250	255	parallel
Strand 5	D	303	310	parallel
Strand 6	D	156	161	parallel
Strand 7	D	330	333	parallel
Strand 8	D	353	354	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	151	152	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	91	first strand
Strand 2	E	117	120	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	214	220	parallel
Strand 3	E	185	193	parallel
Strand 4	E	250	255	parallel
Strand 5	E	301	308	parallel
Strand 6	E	297	298	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	214	220	parallel
Strand 3	E	185	193	parallel
Strand 4	E	250	255	parallel
Strand 5	E	301	308	parallel
Strand 6	E	156	160	parallel
Strand 7	E	330	333	parallel
Strand 8	E	353	354	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	138	first strand
Strand 2	E	151	152	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	91	first strand
Strand 2	F	117	120	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	214	219	parallel
Strand 3	F	185	191	parallel
Strand 4	F	250	255	parallel
Strand 5	F	303	310	parallel
Strand 6	F	156	161	parallel
Strand 7	F	330	333	parallel
Strand 8	F	353	354	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	F	151	152	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	19	first strand
Strand 2	H	5	9	anti-parallel
Strand 3	H	77	80	parallel
Strand 4	H	69	72	anti-parallel
Strand 5	H	41	44	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	23	first strand
Strand 2	H	52	54	anti-parallel
Strand 3	H	61	66	anti-parallel
Strand 4	H	48	49	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	23	first strand
Strand 2	H	52	54	anti-parallel
Strand 3	H	61	66	anti-parallel
Strand 4	H	85	86	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VKR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKR