Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VKV entry

There are 15 chains in PDB entry 9VKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLN 159
B	ALA 1	GLN 159
C	ALA 1	GLN 159
D	ALA 1	GLN 159
E	ALA 1	GLN 159
F	ALA 1	GLN 159
G	ALA 1	GLN 159
H	ALA 1	GLN 159
I	ALA 1	GLN 159
J	ALA 1	GLN 159
K	ALA 1	GLN 159
L	ALA 1	GLN 159
M	ALA 1	GLN 159
N	ALA 1	GLN 159
O	ALA 1	GLN 159

There are 23 helices in PDB entry 9VKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed alpha
Helix 2	AA2	B	24	28	Right-handed alpha
Helix 3	AA3	B	40	42	Right-handed 310
Helix 4	AA4	C	24	28	Right-handed alpha
Helix 5	AA5	C	40	42	Right-handed 310
Helix 6	AA6	D	24	28	Right-handed alpha
Helix 7	AA7	D	40	42	Right-handed 310
Helix 8	AA8	E	24	28	Right-handed alpha
Helix 9	AA9	E	40	42	Right-handed 310
Helix 10	AB1	F	40	42	Right-handed 310
Helix 11	AB2	G	24	28	Right-handed alpha
Helix 12	AB3	G	40	43	Right-handed 310
Helix 13	AB4	H	24	28	Right-handed alpha
Helix 14	AB5	H	40	42	Right-handed 310
Helix 15	AB6	I	40	43	Right-handed 310
Helix 16	AB7	J	24	28	Right-handed alpha
Helix 17	AB8	J	40	43	Right-handed 310
Helix 18	AB9	K	40	42	Right-handed 310
Helix 19	AC1	L	24	28	Right-handed alpha
Helix 20	AC2	L	40	43	Right-handed 310
Helix 21	AC3	M	24	28	Right-handed alpha
Helix 22	AC4	N	40	42	Right-handed 310
Helix 23	AC5	O	40	43	Right-handed 310

There are 52 sheets in PDB entry 9VKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	38	first strand
Strand 2	A	3	17	parallel
Strand 3	B	150	158	anti-parallel
Strand 4	B	68	74	anti-parallel
Strand 5	B	122	123	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	38	first strand
Strand 2	A	3	17	parallel
Strand 3	B	146	147	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	52	61	anti-parallel
Strand 3	A	127	144	anti-parallel
Strand 4	A	97	104	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	68	74	anti-parallel
Strand 3	A	153	158	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	82	86	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	38	first strand
Strand 2	B	3	17	parallel
Strand 3	C	150	158	anti-parallel
Strand 4	C	68	74	anti-parallel
Strand 5	C	122	123	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	38	first strand
Strand 2	B	3	17	parallel
Strand 3	C	146	147	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	52	61	anti-parallel
Strand 3	B	127	139	anti-parallel
Strand 4	B	99	104	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	38	first strand
Strand 2	C	3	17	parallel
Strand 3	D	150	158	anti-parallel
Strand 4	D	68	74	anti-parallel
Strand 5	D	122	123	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	38	first strand
Strand 2	C	3	17	parallel
Strand 3	D	146	147	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	52	61	anti-parallel
Strand 3	C	127	144	anti-parallel
Strand 4	C	97	104	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	79	first strand
Strand 2	C	82	86	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	38	first strand
Strand 2	D	3	17	parallel
Strand 3	E	150	158	anti-parallel
Strand 4	E	68	74	anti-parallel
Strand 5	E	122	123	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	38	first strand
Strand 2	D	3	17	parallel
Strand 3	E	146	147	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	52	61	anti-parallel
Strand 3	D	127	144	anti-parallel
Strand 4	D	97	104	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	82	86	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	38	first strand
Strand 2	E	3	17	parallel
Strand 3	F	150	158	anti-parallel
Strand 4	F	68	74	anti-parallel
Strand 5	F	122	123	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	38	first strand
Strand 2	E	3	17	parallel
Strand 3	F	146	147	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	23	first strand
Strand 2	E	52	61	anti-parallel
Strand 3	E	127	139	anti-parallel
Strand 4	E	99	104	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	38	first strand
Strand 2	F	3	17	parallel
Strand 3	G	150	158	anti-parallel
Strand 4	G	68	74	anti-parallel
Strand 5	G	122	123	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	38	first strand
Strand 2	F	3	17	parallel
Strand 3	G	146	147	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	23	first strand
Strand 2	F	52	61	anti-parallel
Strand 3	F	127	144	anti-parallel
Strand 4	F	97	104	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	82	86	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	38	first strand
Strand 2	G	3	17	parallel
Strand 3	H	150	158	anti-parallel
Strand 4	H	68	74	anti-parallel
Strand 5	H	122	123	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	38	first strand
Strand 2	G	3	17	parallel
Strand 3	H	146	147	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	52	61	anti-parallel
Strand 3	G	127	144	anti-parallel
Strand 4	G	97	104	anti-parallel
Strand 5	G	82	87	anti-parallel
Strand 6	G	77	79	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	38	first strand
Strand 2	H	3	17	parallel
Strand 3	I	150	158	anti-parallel
Strand 4	I	68	74	anti-parallel
Strand 5	I	122	123	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	38	first strand
Strand 2	H	3	17	parallel
Strand 3	I	146	147	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	23	first strand
Strand 2	H	52	61	anti-parallel
Strand 3	H	127	144	anti-parallel
Strand 4	H	97	104	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	82	86	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	38	first strand
Strand 2	I	3	17	parallel
Strand 3	J	150	158	anti-parallel
Strand 4	J	68	74	anti-parallel
Strand 5	J	122	123	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	38	first strand
Strand 2	I	3	17	parallel
Strand 3	J	146	147	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	23	first strand
Strand 2	I	52	61	anti-parallel
Strand 3	I	127	139	anti-parallel
Strand 4	I	99	104	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	77	79	first strand
Strand 2	I	82	86	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	38	first strand
Strand 2	J	3	17	parallel
Strand 3	K	150	158	anti-parallel
Strand 4	K	68	74	anti-parallel
Strand 5	K	122	123	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	38	first strand
Strand 2	J	3	17	parallel
Strand 3	K	146	147	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	22	23	first strand
Strand 2	J	52	61	anti-parallel
Strand 3	J	127	144	anti-parallel
Strand 4	J	97	104	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	38	first strand
Strand 2	K	3	17	parallel
Strand 3	L	150	158	anti-parallel
Strand 4	L	68	74	anti-parallel
Strand 5	L	122	123	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	38	first strand
Strand 2	K	3	17	parallel
Strand 3	L	146	147	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	23	first strand
Strand 2	K	52	61	anti-parallel
Strand 3	K	127	139	anti-parallel
Strand 4	K	99	104	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	79	first strand
Strand 2	K	82	86	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	38	first strand
Strand 2	L	3	17	parallel
Strand 3	M	150	158	anti-parallel
Strand 4	M	68	74	anti-parallel
Strand 5	M	122	123	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	38	first strand
Strand 2	L	3	17	parallel
Strand 3	M	146	147	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	22	23	first strand
Strand 2	L	52	61	anti-parallel
Strand 3	L	127	139	anti-parallel
Strand 4	L	99	104	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	38	first strand
Strand 2	M	3	17	parallel
Strand 3	N	150	158	anti-parallel
Strand 4	N	68	74	anti-parallel
Strand 5	N	122	123	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	38	first strand
Strand 2	M	3	17	parallel
Strand 3	N	146	147	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	22	23	first strand
Strand 2	M	52	61	anti-parallel
Strand 3	M	127	144	anti-parallel
Strand 4	M	97	104	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	29	38	first strand
Strand 2	N	3	17	parallel
Strand 3	O	150	158	anti-parallel
Strand 4	O	68	74	anti-parallel
Strand 5	O	122	123	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	29	38	first strand
Strand 2	N	3	17	parallel
Strand 3	O	146	147	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	23	first strand
Strand 2	N	52	61	anti-parallel
Strand 3	N	127	139	anti-parallel
Strand 4	N	99	104	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	77	79	first strand
Strand 2	N	82	86	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	22	23	first strand
Strand 2	O	52	61	anti-parallel
Strand 3	O	127	139	anti-parallel
Strand 4	O	99	104	anti-parallel
Strand 5	O	85	86	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKV