Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VKW entry

There are 5 chains in PDB entry 9VKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 109SER 702
B
 LYS 11GLN 604
C
 SER 9LEU 105
E
 VAL 173GLU 244
D
 LEU 11SER 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9VKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 126Right-handed alpha
Helix 2
AA2
A
127 142Right-handed alpha
Helix 3
AA3
A
153 167Right-handed alpha
Helix 4
AA4
A
189 199Right-handed 310
Helix 5
AA5
A
215 217Right-handed 310
Helix 6
AA6
A
218 228Right-handed alpha
Helix 7
AA7
A
228 237Right-handed alpha
Helix 8
AA8
A
291 296Right-handed alpha
Helix 9
AA9
A
312 321Right-handed alpha
Helix 10
AB1
A
351 361Right-handed alpha
Helix 11
AB2
A
423 426Right-handed 310
Helix 12
AB3
A
429 445Right-handed alpha
Helix 13
AB4
A
456 486Right-handed alpha
Helix 14
AB5
A
498 507Right-handed alpha
Helix 15
AB6
A
509 521Right-handed alpha
Helix 16
AB7
A
545 558Right-handed alpha
Helix 17
AB8
A
565 569Right-handed 310
Helix 18
AB9
A
588 594Right-handed alpha
Helix 19
AC1
A
678 690Right-handed alpha
Helix 20
AC2
B
97 101Right-handed 310
Helix 21
AC3
B
114 121Right-handed alpha
Helix 22
AC4
B
131 140Right-handed alpha
Helix 23
AC5
B
161 173Right-handed alpha
Helix 24
AC6
B
174 179Right-handed 310
Helix 25
AC7
B
190 202Right-handed alpha
Helix 26
AC8
B
208 228Right-handed alpha
Helix 27
AC9
B
234 252Right-handed alpha
Helix 28
AD1
B
292 296Right-handed alpha
Helix 29
AD2
B
307 313Right-handed alpha
Helix 30
AD3
B
342 347Right-handed alpha
Helix 31
AD4
B
370 374Right-handed 310
Helix 32
AD5
B
399 407Right-handed alpha
Helix 33
AD6
B
416 423Right-handed alpha
Helix 34
AD7
B
446 465Right-handed alpha
Helix 35
AD8
B
496 511Right-handed alpha
Helix 36
AD9
B
515 534Right-handed alpha
Helix 37
AE1
B
551 602Right-handed alpha
Helix 38
AE2
C
12 16Right-handed 310
Helix 39
AE3
C
17 22Right-handed alpha
Helix 40
AE4
C
22 42Right-handed alpha
Helix 41
AE5
C
46 98Right-handed alpha
Helix 42
AE6
E
178 187Right-handed alpha
Helix 43
AE7
E
190 204Right-handed alpha
Helix 44
AE8
E
225 227Right-handed 310
Helix 45
AE9
E
228 244Right-handed alpha
Helix 46
AF1
D
12 46Right-handed alpha
Helix 47
AF2
D
46 53Right-handed alpha
Helix 48
AF3
D
99 110Right-handed alpha
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There are 9 sheets in PDB entry 9VKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
E
219 223anti-parallel
Strand 3
E
211 214anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
300 302parallel
Strand 3
A
309 310anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 336first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
376 385anti-parallel
Strand 4
A
397 407anti-parallel
Strand 5
A
418 421anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
540 541anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
78 80anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
289 291anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
339 340anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
361 362anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 411first strand
Strand 2
B
432 434anti-parallel
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