Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VKZ entry

There are 6 chains in PDB entry 9VKZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 456
B	MET 1	SER 456
C	MET 1	SER 456
D	MET 1	SER 456
E	MET 1	SER 456
F	MET 1	SER 456

There are105 helices in PDB entry 9VKZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	11	Right-handed alpha
Helix 2	AA2	A	13	26	Right-handed alpha
Helix 3	AA3	A	33	49	Right-handed alpha
Helix 4	AA4	A	98	119	Right-handed alpha
Helix 5	AA5	A	176	193	Right-handed alpha
Helix 6	AA6	A	204	209	Right-handed 310
Helix 7	AA7	A	218	223	Right-handed alpha
Helix 8	AA8	A	224	230	Right-handed 310
Helix 9	AA9	A	238	256	Right-handed alpha
Helix 10	AB1	A	257	277	Right-handed alpha
Helix 11	AB2	A	278	281	Right-handed 310
Helix 12	AB3	A	282	304	Right-handed alpha
Helix 13	AB4	A	310	326	Right-handed alpha
Helix 14	AB5	A	358	379	Right-handed alpha
Helix 15	AB6	A	384	388	Right-handed 310
Helix 16	AB7	A	402	417	Right-handed alpha
Helix 17	AB8	A	436	438	Right-handed 310
Helix 18	AB9	B	2	11	Right-handed alpha
Helix 19	AC1	B	13	26	Right-handed alpha
Helix 20	AC2	B	33	49	Right-handed alpha
Helix 21	AC3	B	98	119	Right-handed alpha
Helix 22	AC4	B	176	193	Right-handed alpha
Helix 23	AC5	B	204	209	Right-handed 310
Helix 24	AC6	B	218	223	Right-handed alpha
Helix 25	AC7	B	224	230	Right-handed 310
Helix 26	AC8	B	238	256	Right-handed alpha
Helix 27	AC9	B	257	276	Right-handed alpha
Helix 28	AD1	B	277	278	Right-handed 310
Helix 29	AD2	B	279	281	Right-handed 310
Helix 30	AD3	B	282	304	Right-handed alpha
Helix 31	AD4	B	310	326	Right-handed alpha
Helix 32	AD5	B	358	379	Right-handed alpha
Helix 33	AD6	B	384	388	Right-handed 310
Helix 34	AD7	B	402	417	Right-handed alpha
Helix 35	AD8	B	436	438	Right-handed 310
Helix 36	AD9	C	2	11	Right-handed alpha
Helix 37	AE1	C	13	26	Right-handed alpha
Helix 38	AE2	C	33	49	Right-handed alpha
Helix 39	AE3	C	98	119	Right-handed alpha
Helix 40	AE4	C	176	193	Right-handed alpha
Helix 41	AE5	C	204	209	Right-handed 310
Helix 42	AE6	C	218	223	Right-handed alpha
Helix 43	AE7	C	224	230	Right-handed 310
Helix 44	AE8	C	238	256	Right-handed alpha
Helix 45	AE9	C	257	277	Right-handed alpha
Helix 46	AF1	C	278	281	Right-handed 310
Helix 47	AF2	C	282	304	Right-handed alpha
Helix 48	AF3	C	310	326	Right-handed alpha
Helix 49	AF4	C	358	379	Right-handed alpha
Helix 50	AF5	C	384	388	Right-handed 310
Helix 51	AF6	C	402	417	Right-handed alpha
Helix 52	AF7	C	428	432	Right-handed 310
Helix 53	AF8	C	436	438	Right-handed 310
Helix 54	AF9	D	2	11	Right-handed alpha
Helix 55	AG1	D	13	26	Right-handed alpha
Helix 56	AG2	D	33	49	Right-handed alpha
Helix 57	AG3	D	98	119	Right-handed alpha
Helix 58	AG4	D	176	193	Right-handed alpha
Helix 59	AG5	D	204	209	Right-handed 310
Helix 60	AG6	D	218	223	Right-handed alpha
Helix 61	AG7	D	224	230	Right-handed 310
Helix 62	AG8	D	238	256	Right-handed alpha
Helix 63	AG9	D	257	277	Right-handed alpha
Helix 64	AH1	D	278	281	Right-handed 310
Helix 65	AH2	D	282	304	Right-handed alpha
Helix 66	AH3	D	310	326	Right-handed alpha
Helix 67	AH4	D	358	379	Right-handed alpha
Helix 68	AH5	D	384	388	Right-handed 310
Helix 69	AH6	D	402	417	Right-handed alpha
Helix 70	AH7	D	436	438	Right-handed 310
Helix 71	AH8	E	2	11	Right-handed alpha
Helix 72	AH9	E	13	26	Right-handed alpha
Helix 73	AI1	E	33	49	Right-handed alpha
Helix 74	AI2	E	98	119	Right-handed alpha
Helix 75	AI3	E	176	193	Right-handed alpha
Helix 76	AI4	E	204	209	Right-handed 310
Helix 77	AI5	E	218	223	Right-handed alpha
Helix 78	AI6	E	224	230	Right-handed 310
Helix 79	AI7	E	238	256	Right-handed alpha
Helix 80	AI8	E	257	276	Right-handed alpha
Helix 81	AI9	E	277	278	Right-handed 310
Helix 82	AJ1	E	279	281	Right-handed 310
Helix 83	AJ2	E	282	304	Right-handed alpha
Helix 84	AJ3	E	310	326	Right-handed alpha
Helix 85	AJ4	E	358	379	Right-handed alpha
Helix 86	AJ5	E	384	388	Right-handed 310
Helix 87	AJ6	E	402	417	Right-handed alpha
Helix 88	AJ7	E	436	438	Right-handed 310
Helix 89	AJ8	F	2	11	Right-handed alpha
Helix 90	AJ9	F	13	26	Right-handed alpha
Helix 91	AK1	F	33	49	Right-handed alpha
Helix 92	AK2	F	98	119	Right-handed alpha
Helix 93	AK3	F	176	193	Right-handed alpha
Helix 94	AK4	F	204	209	Right-handed 310
Helix 95	AK5	F	218	223	Right-handed alpha
Helix 96	AK6	F	224	230	Right-handed 310
Helix 97	AK7	F	238	256	Right-handed alpha
Helix 98	AK8	F	257	277	Right-handed alpha
Helix 99	AK9	F	278	281	Right-handed 310
Helix 100	AL1	F	282	304	Right-handed alpha
Helix 101	AL2	F	310	326	Right-handed alpha
Helix 102	AL3	F	358	379	Right-handed alpha
Helix 103	AL4	F	384	388	Right-handed 310
Helix 104	AL5	F	402	417	Right-handed alpha
Helix 105	AL6	F	436	438	Right-handed 310

There are 24 sheets in PDB entry 9VKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	58	60	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	164	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	64	72	anti-parallel
Strand 4	A	80	83	anti-parallel
Strand 5	A	452	453	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	203	first strand
Strand 2	A	390	395	parallel
Strand 3	A	420	426	parallel
Strand 4	A	88	92	parallel
Strand 5	A	440	442	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	335	first strand
Strand 2	A	342	347	anti-parallel
Strand 3	A	350	353	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	58	60	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	164	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	80	83	anti-parallel
Strand 5	B	452	453	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	203	first strand
Strand 2	B	390	395	parallel
Strand 3	B	420	426	parallel
Strand 4	B	88	92	parallel
Strand 5	B	440	442	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	335	first strand
Strand 2	B	342	347	anti-parallel
Strand 3	B	350	353	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	64	72	anti-parallel
Strand 3	C	141	150	anti-parallel
Strand 4	C	154	164	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	203	first strand
Strand 2	C	390	395	parallel
Strand 3	C	420	426	parallel
Strand 4	C	88	92	parallel
Strand 5	C	440	442	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	335	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	350	353	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	58	60	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	164	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	64	72	anti-parallel
Strand 4	D	80	83	anti-parallel
Strand 5	D	452	453	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	203	first strand
Strand 2	D	390	395	parallel
Strand 3	D	420	426	parallel
Strand 4	D	88	92	parallel
Strand 5	D	440	442	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	335	first strand
Strand 2	D	342	347	anti-parallel
Strand 3	D	350	353	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	58	60	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	164	first strand
Strand 2	E	141	150	anti-parallel
Strand 3	E	64	72	anti-parallel
Strand 4	E	80	83	anti-parallel
Strand 5	E	452	453	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	203	first strand
Strand 2	E	390	395	parallel
Strand 3	E	420	426	parallel
Strand 4	E	88	92	parallel
Strand 5	E	440	442	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	335	first strand
Strand 2	E	342	347	anti-parallel
Strand 3	E	350	353	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	52	first strand
Strand 2	F	58	60	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	164	first strand
Strand 2	F	141	150	anti-parallel
Strand 3	F	64	72	anti-parallel
Strand 4	F	80	83	anti-parallel
Strand 5	F	452	453	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	203	first strand
Strand 2	F	390	395	parallel
Strand 3	F	420	426	parallel
Strand 4	F	88	92	parallel
Strand 5	F	440	442	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	329	335	first strand
Strand 2	F	342	347	anti-parallel
Strand 3	F	350	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VKZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VKZ