Analysis of interatomic Contacts of Structural Units in PDB entry:
9VL4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VL4 entry

There are 6 chains in PDB entry 9VL4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 125	ALA 564
C	GLU 125	ALA 564
D	GLU 125	ALA 564
E	GLU 125	ALA 564
F	GLU 125	ALA 564
A	GLU 125	ALA 564

There are 45 helices in PDB entry 9VL4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	220	224	Right-handed alpha
Helix 2	AA2	B	332	342	Right-handed alpha
Helix 3	AA3	B	345	373	Right-handed alpha
Helix 4	AA4	B	389	413	Right-handed alpha
Helix 5	AA5	B	423	432	Right-handed alpha
Helix 6	AA6	B	466	476	Right-handed alpha
Helix 7	AA7	B	536	539	Right-handed 310
Helix 8	AA8	C	220	224	Right-handed alpha
Helix 9	AA9	C	332	342	Right-handed alpha
Helix 10	AB1	C	345	373	Right-handed alpha
Helix 11	AB2	C	389	413	Right-handed alpha
Helix 12	AB3	C	423	431	Right-handed alpha
Helix 13	AB4	C	466	475	Right-handed alpha
Helix 14	AB5	C	537	539	Right-handed 310
Helix 15	AB6	D	152	156	Right-handed 310
Helix 16	AB7	D	220	224	Right-handed alpha
Helix 17	AB8	D	332	343	Right-handed alpha
Helix 18	AB9	D	345	373	Right-handed alpha
Helix 19	AC1	D	389	413	Right-handed alpha
Helix 20	AC2	D	423	432	Right-handed alpha
Helix 21	AC3	D	466	476	Right-handed alpha
Helix 22	AC4	D	536	539	Right-handed 310
Helix 23	AC5	E	152	156	Right-handed 310
Helix 24	AC6	E	221	223	Right-handed 310
Helix 25	AC7	E	332	343	Right-handed alpha
Helix 26	AC8	E	345	374	Right-handed alpha
Helix 27	AC9	E	389	413	Right-handed alpha
Helix 28	AD1	E	423	432	Right-handed alpha
Helix 29	AD2	E	466	476	Right-handed alpha
Helix 30	AD3	E	537	539	Right-handed 310
Helix 31	AD4	F	220	224	Right-handed alpha
Helix 32	AD5	F	332	342	Right-handed alpha
Helix 33	AD6	F	345	373	Right-handed alpha
Helix 34	AD7	F	389	413	Right-handed alpha
Helix 35	AD8	F	423	431	Right-handed alpha
Helix 36	AD9	F	466	475	Right-handed alpha
Helix 37	AE1	F	537	539	Right-handed 310
Helix 38	AE2	A	152	156	Right-handed 310
Helix 39	AE3	A	221	223	Right-handed 310
Helix 40	AE4	A	332	343	Right-handed alpha
Helix 41	AE5	A	345	374	Right-handed alpha
Helix 42	AE6	A	389	413	Right-handed alpha
Helix 43	AE7	A	423	432	Right-handed alpha
Helix 44	AE8	A	466	476	Right-handed alpha
Helix 45	AE9	A	536	539	Right-handed 310

There are 40 sheets in PDB entry 9VL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	A	166	171	parallel
Strand 3	A	314	319	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	499	511	parallel
Strand 3	B	519	532	anti-parallel
Strand 4	B	322	331	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	314	first strand
Strand 2	B	166	175	anti-parallel
Strand 3	C	138	143	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	206	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	236	239	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	219	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	264	272	anti-parallel
Strand 4	B	252	258	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	541	547	parallel
Strand 3	B	484	491	anti-parallel
Strand 4	B	416	422	anti-parallel
Strand 5	B	460	464	parallel
Strand 6	B	451	456	anti-parallel
Strand 7	B	438	440	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	385	first strand
Strand 2	B	553	554	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	499	511	parallel
Strand 3	C	519	532	anti-parallel
Strand 4	C	322	331	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	319	first strand
Strand 2	C	166	175	anti-parallel
Strand 3	D	142	143	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	206	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	236	239	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	219	first strand
Strand 2	C	277	282	anti-parallel
Strand 3	C	264	272	anti-parallel
Strand 4	C	252	258	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	381	first strand
Strand 2	C	541	547	parallel
Strand 3	C	484	488	anti-parallel
Strand 4	C	419	422	anti-parallel
Strand 5	C	460	464	parallel
Strand 6	C	451	456	anti-parallel
Strand 7	C	438	440	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	385	first strand
Strand 2	C	553	554	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	499	512	parallel
Strand 3	D	519	532	anti-parallel
Strand 4	D	322	331	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	314	first strand
Strand 2	D	166	175	anti-parallel
Strand 3	D	317	319	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	314	first strand
Strand 2	D	166	175	anti-parallel
Strand 3	E	139	143	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	206	first strand
Strand 2	D	292	297	anti-parallel
Strand 3	D	236	239	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	219	first strand
Strand 2	D	277	282	anti-parallel
Strand 3	D	264	272	anti-parallel
Strand 4	D	252	258	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	381	first strand
Strand 2	D	541	547	parallel
Strand 3	D	484	490	anti-parallel
Strand 4	D	417	422	anti-parallel
Strand 5	D	460	464	parallel
Strand 6	D	451	456	anti-parallel
Strand 7	D	438	440	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	385	first strand
Strand 2	D	553	554	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	499	511	parallel
Strand 3	E	519	532	anti-parallel
Strand 4	E	322	331	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	310	316	first strand
Strand 2	E	166	175	anti-parallel
Strand 3	F	138	143	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	206	first strand
Strand 2	E	292	297	anti-parallel
Strand 3	E	236	239	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	219	first strand
Strand 2	E	277	282	anti-parallel
Strand 3	E	264	268	anti-parallel
Strand 4	E	254	258	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	219	first strand
Strand 2	E	277	282	anti-parallel
Strand 3	E	271	272	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	381	first strand
Strand 2	E	541	547	parallel
Strand 3	E	484	488	anti-parallel
Strand 4	E	419	422	anti-parallel
Strand 5	E	460	464	parallel
Strand 6	E	451	456	anti-parallel
Strand 7	E	438	440	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	384	385	first strand
Strand 2	E	553	554	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	499	511	parallel
Strand 3	F	519	532	anti-parallel
Strand 4	F	322	331	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	319	first strand
Strand 2	F	166	171	anti-parallel
Strand 3	A	138	143	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	175	first strand
Strand 2	F	310	311	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	206	first strand
Strand 2	F	292	297	anti-parallel
Strand 3	F	236	239	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	219	first strand
Strand 2	F	277	282	anti-parallel
Strand 3	F	264	272	anti-parallel
Strand 4	F	252	258	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	376	381	first strand
Strand 2	F	541	547	parallel
Strand 3	F	484	488	anti-parallel
Strand 4	F	419	422	anti-parallel
Strand 5	F	460	464	parallel
Strand 6	F	451	456	anti-parallel
Strand 7	F	438	440	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	384	385	first strand
Strand 2	F	553	555	anti-parallel
Strand 3	F	560	561	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	499	512	parallel
Strand 3	A	519	532	anti-parallel
Strand 4	A	322	331	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	310	311	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	206	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	236	239	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	219	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	264	271	anti-parallel
Strand 4	A	254	258	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	541	547	parallel
Strand 3	A	484	490	anti-parallel
Strand 4	A	417	422	anti-parallel
Strand 5	A	460	464	parallel
Strand 6	A	451	456	anti-parallel
Strand 7	A	438	440	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	553	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VL4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VL4