Analysis of interatomic Contacts of Structural Units in PDB entry:
9VL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VL5 entry

There are 2 chains in PDB entry 9VL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 108PRO 665
A
 SER 108HIS 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 9VL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
108 137Right-handed alpha
Helix 2
AA2
B
140 147Right-handed alpha
Helix 3
AA3
B
149 159Right-handed alpha
Helix 4
AA4
B
169 184Right-handed alpha
Helix 5
AA5
B
189 214Right-handed alpha
Helix 6
AA6
B
216 223Right-handed 310
Helix 7
AA7
B
224 243Right-handed alpha
Helix 8
AA8
B
276 298Right-handed alpha
Helix 9
AA9
B
301 307Right-handed alpha
Helix 10
AB1
B
307 323Right-handed alpha
Helix 11
AB2
B
352 382Right-handed alpha
Helix 12
AB3
B
387 404Right-handed alpha
Helix 13
AB4
B
413 423Right-handed alpha
Helix 14
AB5
B
428 444Right-handed alpha
Helix 15
AB6
B
446 450Right-handed 310
Helix 16
AB7
B
453 469Right-handed alpha
Helix 17
AB8
B
471 481Right-handed alpha
Helix 18
AB9
B
481 498Right-handed alpha
Helix 19
AC1
B
499 521Right-handed alpha
Helix 20
AC2
B
561 583Right-handed alpha
Helix 21
AC3
B
605 621Right-handed alpha
Helix 22
AC4
B
632 642Right-handed alpha
Helix 23
AC5
B
642 648Right-handed alpha
Helix 24
AC6
B
656 663Right-handed alpha
Helix 25
AC7
A
109 137Right-handed alpha
Helix 26
AC8
A
140 147Right-handed alpha
Helix 27
AC9
A
149 159Right-handed alpha
Helix 28
AD1
A
169 184Right-handed alpha
Helix 29
AD2
A
189 214Right-handed alpha
Helix 30
AD3
A
216 223Right-handed 310
Helix 31
AD4
A
224 245Right-handed alpha
Helix 32
AD5
A
274 298Right-handed alpha
Helix 33
AD6
A
301 307Right-handed alpha
Helix 34
AD7
A
307 324Right-handed alpha
Helix 35
AD8
A
342 346Right-handed 310
Helix 36
AD9
A
352 383Right-handed alpha
Helix 37
AE1
A
387 405Right-handed alpha
Helix 38
AE2
A
413 423Right-handed alpha
Helix 39
AE3
A
428 444Right-handed alpha
Helix 40
AE4
A
446 450Right-handed 310
Helix 41
AE5
A
453 469Right-handed alpha
Helix 42
AE6
A
470 481Right-handed alpha
Helix 43
AE7
A
481 498Right-handed alpha
Helix 44
AE8
A
499 521Right-handed alpha
Helix 45
AE9
A
564 583Right-handed alpha
Helix 46
AF1
A
599 601Right-handed 310
Helix 47
AF2
A
605 622Right-handed alpha
Helix 48
AF3
A
632 641Right-handed alpha
Helix 49
AF4
A
642 649Right-handed alpha
Helix 50
AF5
A
656 664Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9VL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
411 412anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
536 538first strand
Strand 2
B
524 529anti-parallel
Strand 3
B
552 556anti-parallel
Strand 4
B
593 597parallel
Strand 5
B
625 629parallel
Strand 6
B
653 654parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
411 412anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 538first strand
Strand 2
A
523 529anti-parallel
Strand 3
A
551 557anti-parallel
Strand 4
A
593 597parallel
Strand 5
A
625 629parallel
Strand 6
A
653 654parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il