Analysis of interatomic Contacts of Structural Units in PDB entry:
9VLK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VLK entry

There are 2 chains in PDB entry 9VLK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 457
B
 MET 1THR 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9VLK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 54Right-handed alpha
Helix 2
AA2
A
58 78Right-handed alpha
Helix 3
AA3
A
79 84Right-handed alpha
Helix 4
AA4
A
100 105Right-handed alpha
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
158 170Right-handed alpha
Helix 7
AA7
A
183 202Right-handed alpha
Helix 8
AA8
A
231 246Right-handed alpha
Helix 9
AA9
A
257 263Right-handed alpha
Helix 10
AB1
A
280 295Right-handed alpha
Helix 11
AB2
A
308 315Right-handed alpha
Helix 12
AB3
A
318 326Right-handed alpha
Helix 13
AB4
A
327 329Right-handed 310
Helix 14
AB5
A
355 370Right-handed alpha
Helix 15
AB6
A
390 409Right-handed alpha
Helix 16
AB7
A
412 417Right-handed alpha
Helix 17
AB8
A
429 448Right-handed alpha
Helix 18
AB9
B
42 52Right-handed alpha
Helix 19
AC1
B
58 78Right-handed alpha
Helix 20
AC2
B
79 84Right-handed alpha
Helix 21
AC3
B
100 120Right-handed alpha
Helix 22
AC4
B
158 170Right-handed alpha
Helix 23
AC5
B
183 202Right-handed alpha
Helix 24
AC6
B
231 247Right-handed alpha
Helix 25
AC7
B
257 263Right-handed alpha
Helix 26
AC8
B
280 294Right-handed alpha
Helix 27
AC9
B
308 315Right-handed alpha
Helix 28
AD1
B
318 324Right-handed alpha
Helix 29
AD2
B
355 370Right-handed alpha
Helix 30
AD3
B
390 409Right-handed alpha
Helix 31
AD4
B
412 417Right-handed alpha
Helix 32
AD5
B
429 447Right-handed alpha
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There are 7 sheets in PDB entry 9VLK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
3 9parallel
Strand 3
A
91 98parallel
Strand 4
A
122 129parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
176 180parallel
Strand 3
A
152 154parallel
Strand 4
A
250 253parallel
Strand 5
A
298 301parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
452 454parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 31first strand
Strand 2
B
3 9parallel
Strand 3
B
91 98parallel
Strand 4
B
122 129parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 210first strand
Strand 2
B
176 180parallel
Strand 3
B
152 154parallel
Strand 4
B
250 253parallel
Strand 5
B
298 301parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
349 350anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
453 454parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il