Analysis of interatomic Contacts of Structural Units in PDB entry:
9VLL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VLL entry

There are 2 chains in PDB entry 9VLL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2HIS 277
B
 MET 1THR 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9VLL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
53 67Right-handed alpha
Helix 3
AA3
A
69 82Right-handed alpha
Helix 4
AA4
A
86 93Right-handed alpha
Helix 5
AA5
A
94 120Right-handed alpha
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
132 145Right-handed alpha
Helix 8
AA8
A
150 167Right-handed alpha
Helix 9
AA9
A
168 170Right-handed 310
Helix 10
AB1
A
179 204Right-handed alpha
Helix 11
AB2
A
213 239Right-handed alpha
Helix 12
AB3
A
247 276Right-handed alpha
Helix 13
AB4
B
42 53Right-handed alpha
Helix 14
AB5
B
58 78Right-handed alpha
Helix 15
AB6
B
100 106Right-handed alpha
Helix 16
AB7
B
107 120Right-handed alpha
Helix 17
AB8
B
158 170Right-handed alpha
Helix 18
AB9
B
183 202Right-handed alpha
Helix 19
AC1
B
230 247Right-handed alpha
Helix 20
AC2
B
257 263Right-handed alpha
Helix 21
AC3
B
267 275Right-handed 310
Helix 22
AC4
B
280 295Right-handed alpha
Helix 23
AC5
B
308 315Right-handed alpha
Helix 24
AC6
B
318 325Right-handed alpha
Helix 25
AC7
B
326 329Right-handed 310
Helix 26
AC8
B
355 370Right-handed alpha
Helix 27
AC9
B
390 409Right-handed alpha
Helix 28
AD1
B
412 417Right-handed alpha
Helix 29
AD2
B
429 449Right-handed alpha
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There are 4 sheets in PDB entry 9VLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
4 9parallel
Strand 3
B
91 98parallel
Strand 4
B
122 129parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 211first strand
Strand 2
B
176 181parallel
Strand 3
B
152 154parallel
Strand 4
B
250 253parallel
Strand 5
B
298 301parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
349 350anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
453 454parallel
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