Analysis of interatomic Contacts of Structural Units in PDB entry:
9VLQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VLQ entry

There are 4 chains in PDB entry 9VLQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 31	TYR 882
B	THR 3	ALA 750
C	VAL 18	SER 893
X	T 1	T 5

There are106 helices in PDB entry 9VLQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	45	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	67	77	Right-handed alpha
Helix 4	AA4	A	79	83	Right-handed 310
Helix 5	AA5	A	102	114	Right-handed alpha
Helix 6	AA6	A	122	137	Right-handed alpha
Helix 7	AA7	A	145	150	Right-handed alpha
Helix 8	AA8	A	152	157	Right-handed 310
Helix 9	AA9	A	173	185	Right-handed alpha
Helix 10	AB1	A	185	200	Right-handed alpha
Helix 11	AB2	A	207	220	Right-handed alpha
Helix 12	AB3	A	224	229	Right-handed alpha
Helix 13	AB4	A	230	234	Right-handed 310
Helix 14	AB5	A	238	242	Right-handed 310
Helix 15	AB6	A	251	254	Right-handed 310
Helix 16	AB7	A	255	256	Right-handed 310
Helix 17	AB8	A	257	274	Right-handed alpha
Helix 18	AB9	A	275	280	Right-handed alpha
Helix 19	AC1	A	316	324	Right-handed alpha
Helix 20	AC2	A	324	332	Right-handed alpha
Helix 21	AC3	A	348	352	Right-handed 310
Helix 22	AC4	A	365	373	Right-handed alpha
Helix 23	AC5	A	374	376	Right-handed 310
Helix 24	AC6	A	378	384	Right-handed alpha
Helix 25	AC7	A	397	415	Right-handed alpha
Helix 26	AC8	A	432	443	Right-handed alpha
Helix 27	AC9	A	449	457	Right-handed alpha
Helix 28	AD1	A	457	462	Right-handed alpha
Helix 29	AD2	A	516	527	Right-handed alpha
Helix 30	AD3	A	527	533	Right-handed alpha
Helix 31	AD4	A	544	552	Right-handed alpha
Helix 32	AD5	A	554	562	Right-handed alpha
Helix 33	AD6	A	566	585	Right-handed alpha
Helix 34	AD7	A	660	685	Right-handed alpha
Helix 35	AD8	A	738	745	Right-handed alpha
Helix 36	AD9	A	751	759	Right-handed alpha
Helix 37	AE1	A	831	839	Right-handed alpha
Helix 38	AE2	A	853	857	Right-handed 310
Helix 39	AE3	A	871	875	Right-handed 310
Helix 40	AE4	B	57	65	Right-handed alpha
Helix 41	AE5	B	70	81	Right-handed alpha
Helix 42	AE6	B	94	113	Right-handed alpha
Helix 43	AE7	B	161	172	Right-handed alpha
Helix 44	AE8	B	176	188	Right-handed alpha
Helix 45	AE9	B	189	192	Right-handed 310
Helix 46	AF1	B	225	229	Right-handed 310
Helix 47	AF2	B	267	283	Right-handed alpha
Helix 48	AF3	B	297	301	Right-handed 310
Helix 49	AF4	B	326	328	Right-handed 310
Helix 50	AF5	B	329	343	Right-handed alpha
Helix 51	AF6	B	347	352	Right-handed alpha
Helix 52	AF7	B	353	356	Right-handed 310
Helix 53	AF8	B	358	360	Right-handed 310
Helix 54	AF9	B	361	371	Right-handed alpha
Helix 55	AG1	B	374	383	Right-handed alpha
Helix 56	AG2	B	412	422	Right-handed alpha
Helix 57	AG3	B	425	431	Right-handed alpha
Helix 58	AG4	B	435	448	Right-handed alpha
Helix 59	AG5	B	451	460	Right-handed alpha
Helix 60	AG6	B	461	466	Right-handed alpha
Helix 61	AG7	B	469	494	Right-handed alpha
Helix 62	AG8	B	516	542	Right-handed alpha
Helix 63	AG9	B	588	607	Right-handed alpha
Helix 64	AH1	B	617	637	Right-handed alpha
Helix 65	AH2	B	638	640	Right-handed 310
Helix 66	AH3	B	660	666	Right-handed 310
Helix 67	AH4	B	667	673	Right-handed 310
Helix 68	AH5	B	695	697	Right-handed 310
Helix 69	AH6	B	707	731	Right-handed alpha
Helix 70	AH7	B	740	745	Right-handed alpha
Helix 71	AH8	C	29	39	Right-handed alpha
Helix 72	AH9	C	66	78	Right-handed alpha
Helix 73	AI1	C	120	134	Right-handed alpha
Helix 74	AI2	C	138	145	Right-handed alpha
Helix 75	AI3	C	148	155	Right-handed alpha
Helix 76	AI4	C	156	168	Right-handed alpha
Helix 77	AI5	C	198	209	Right-handed alpha
Helix 78	AI6	C	209	221	Right-handed alpha
Helix 79	AI7	C	227	235	Right-handed alpha
Helix 80	AI8	C	238	250	Right-handed alpha
Helix 81	AI9	C	251	257	Right-handed alpha
Helix 82	AJ1	C	258	262	Right-handed 310
Helix 83	AJ2	C	264	274	Right-handed alpha
Helix 84	AJ3	C	287	291	Right-handed 310
Helix 85	AJ4	C	293	304	Right-handed alpha
Helix 86	AJ5	C	305	312	Right-handed 310
Helix 87	AJ6	C	314	331	Right-handed alpha
Helix 88	AJ7	C	333	338	Right-handed alpha
Helix 89	AJ8	C	339	341	Right-handed 310
Helix 90	AJ9	C	347	361	Right-handed alpha
Helix 91	AK1	C	364	376	Right-handed alpha
Helix 92	AK2	C	391	403	Right-handed alpha
Helix 93	AK3	C	409	418	Right-handed alpha
Helix 94	AK4	C	427	438	Right-handed alpha
Helix 95	AK5	C	456	472	Right-handed alpha
Helix 96	AK6	C	499	510	Right-handed alpha
Helix 97	AK7	C	519	525	Right-handed alpha
Helix 98	AK8	C	554	560	Right-handed alpha
Helix 99	AK9	C	565	575	Right-handed alpha
Helix 100	AL1	C	578	593	Right-handed alpha
Helix 101	AL2	C	603	608	Right-handed alpha
Helix 102	AL3	C	638	661	Right-handed alpha
Helix 103	AL4	C	776	793	Right-handed alpha
Helix 104	AL5	C	795	802	Right-handed alpha
Helix 105	AL6	C	852	860	Right-handed alpha
Helix 106	AL7	C	861	866	Right-handed 310

There are 19 sheets in PDB entry 9VLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	285	289	parallel
Strand 3	A	245	249	parallel
Strand 4	A	117	120	parallel
Strand 5	A	143	144	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	337	340	parallel
Strand 3	A	880	881	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	821	823	parallel
Strand 3	A	848	849	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	424	first strand
Strand 2	A	493	495	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	428	431	anti-parallel
Strand 3	A	795	799	anti-parallel
Strand 4	A	779	782	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	707	first strand
Strand 2	A	723	732	parallel
Strand 3	A	763	767	anti-parallel
Strand 4	A	772	776	anti-parallel
Strand 5	A	507	513	anti-parallel
Strand 6	A	716	719	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	707	first strand
Strand 2	A	723	732	parallel
Strand 3	A	499	502	anti-parallel
Strand 4	A	803	804	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	56	first strand
Strand 2	B	30	40	anti-parallel
Strand 3	B	9	22	anti-parallel
Strand 4	B	122	124	anti-parallel
Strand 5	B	136	138	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	258	259	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	196	199	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	237	first strand
Strand 2	B	246	252	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	311	312	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	400	first strand
Strand 2	B	560	563	anti-parallel
Strand 3	B	569	572	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	501	first strand
Strand 2	B	505	509	anti-parallel
Strand 3	B	405	409	anti-parallel
Strand 4	B	553	558	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	650	first strand
Strand 2	B	677	682	anti-parallel
Strand 3	B	690	693	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	55	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	89	96	parallel
Strand 4	C	110	118	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	425	first strand
Strand 2	C	881	886	anti-parallel
Strand 3	C	773	774	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	455	first strand
Strand 2	C	545	552	anti-parallel
Strand 3	C	535	539	anti-parallel
Strand 4	C	613	615	anti-parallel
Strand 5	C	821	823	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	626	629	first strand
Strand 2	C	762	765	anti-parallel
Strand 3	C	674	678	anti-parallel
Strand 4	C	840	843	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VLQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VLQ