Analysis of interatomic Contacts of Structural Units in PDB entry:
9VLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VLR entry

There is 1 chain in PDB entry 9VLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 27GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9VLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
52 60Right-handed alpha
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
80 86Right-handed alpha
Helix 5
AA5
A
90 104Right-handed alpha
Helix 6
AA6
A
104 116Right-handed alpha
Helix 7
AA7
A
118 131Right-handed alpha
Helix 8
AA8
A
141 152Right-handed alpha
Helix 9
AA9
A
155 174Right-handed alpha
Helix 10
AB1
A
176 179Right-handed 310
Helix 11
AB2
A
194 202Right-handed alpha
Helix 12
AB3
A
216 231Right-handed alpha
Helix 13
AB4
A
249 253Right-handed 310
Helix 14
AB5
A
264 268Right-handed alpha
Helix 15
AB6
A
304 312Right-handed alpha
Helix 16
AB7
A
316 333Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9VLR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
286 294anti-parallel
Strand 3
A
297 303anti-parallel
Strand 4
A
240 245anti-parallel
Strand 5
A
272 274anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il