Analysis of interatomic Contacts of Structural Units in PDB entry:
9VLS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VLS entry

There are 9 chains in PDB entry 9VLS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 703	ASP 1139
G	VAL 2	PRO 221
H	SER 2	PRO 212
B	ASN 703	ASP 1139
I	VAL 2	PRO 221
J	SER 2	PRO 212
C	ASN 703	ASP 1139
K	VAL 2	PRO 221
L	SER 2	PRO 212

There are 48 helices in PDB entry 9VLS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	703	708	Right-handed 310
Helix 2	AA2	A	737	743	Right-handed alpha
Helix 3	AA3	A	746	754	Right-handed alpha
Helix 4	AA4	A	755	757	Right-handed 310
Helix 5	AA5	A	758	769	Right-handed alpha
Helix 6	AA6	A	814	823	Right-handed alpha
Helix 7	AA7	A	836	842	Right-handed alpha
Helix 8	AA8	A	844	850	Right-handed 310
Helix 9	AA9	A	866	884	Right-handed alpha
Helix 10	AB1	A	895	1032	Right-handed alpha
Helix 11	AB2	A	1116	1118	Right-handed 310
Helix 12	AB3	G	161	165	Right-handed 310
Helix 13	AB4	G	195	198	Right-handed 310
Helix 14	AB5	H	25	30	Right-handed alpha
Helix 15	AB6	H	125	130	Right-handed alpha
Helix 16	AB7	H	185	192	Right-handed alpha
Helix 17	AB8	B	703	708	Right-handed 310
Helix 18	AB9	B	737	743	Right-handed alpha
Helix 19	AC1	B	746	754	Right-handed alpha
Helix 20	AC2	B	755	757	Right-handed 310
Helix 21	AC3	B	758	769	Right-handed alpha
Helix 22	AC4	B	814	823	Right-handed alpha
Helix 23	AC5	B	836	842	Right-handed alpha
Helix 24	AC6	B	844	850	Right-handed 310
Helix 25	AC7	B	866	884	Right-handed alpha
Helix 26	AC8	B	895	1032	Right-handed alpha
Helix 27	AC9	B	1116	1118	Right-handed 310
Helix 28	AD1	I	161	165	Right-handed 310
Helix 29	AD2	I	195	198	Right-handed 310
Helix 30	AD3	J	25	30	Right-handed alpha
Helix 31	AD4	J	125	130	Right-handed alpha
Helix 32	AD5	J	185	192	Right-handed alpha
Helix 33	AD6	C	703	708	Right-handed 310
Helix 34	AD7	C	737	743	Right-handed alpha
Helix 35	AD8	C	746	754	Right-handed alpha
Helix 36	AD9	C	755	757	Right-handed 310
Helix 37	AE1	C	758	769	Right-handed alpha
Helix 38	AE2	C	814	823	Right-handed alpha
Helix 39	AE3	C	836	842	Right-handed alpha
Helix 40	AE4	C	844	850	Right-handed 310
Helix 41	AE5	C	866	884	Right-handed alpha
Helix 42	AE6	C	895	1032	Right-handed alpha
Helix 43	AE7	C	1116	1118	Right-handed 310
Helix 44	AE8	K	161	165	Right-handed 310
Helix 45	AE9	K	195	198	Right-handed 310
Helix 46	AF1	L	25	30	Right-handed alpha
Helix 47	AF2	L	125	130	Right-handed alpha
Helix 48	AF3	L	185	192	Right-handed alpha

There are 45 sheets in PDB entry 9VLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	718	first strand
Strand 2	A	1069	1075	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	727	first strand
Strand 2	A	1059	1064	anti-parallel
Strand 3	A	1053	1056	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	853	854	first strand
Strand 2	A	859	860	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1090	first strand
Strand 2	A	1120	1122	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel
Strand 3	A	1113	1114	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	23	first strand
Strand 2	G	78	82	anti-parallel
Strand 3	G	69	73	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	35	39	anti-parallel
Strand 4	G	93	97	anti-parallel
Strand 5	G	115	116	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	132	first strand
Strand 2	G	143	153	anti-parallel
Strand 3	G	184	193	anti-parallel
Strand 4	G	172	173	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	132	first strand
Strand 2	G	143	153	anti-parallel
Strand 3	G	184	193	anti-parallel
Strand 4	G	177	178	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	208	first strand
Strand 2	G	213	217	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	64	69	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	51	first strand
Strand 2	H	35	39	anti-parallel
Strand 3	H	88	93	anti-parallel
Strand 4	H	99	100	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	122	first strand
Strand 2	H	134	139	anti-parallel
Strand 3	H	179	184	anti-parallel
Strand 4	H	162	165	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	196	first strand
Strand 2	H	209	210	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	201	first strand
Strand 2	H	204	206	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	718	first strand
Strand 2	B	1069	1076	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	727	first strand
Strand 2	B	1059	1064	anti-parallel
Strand 3	B	1053	1056	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	853	854	first strand
Strand 2	B	859	860	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1090	first strand
Strand 2	B	1120	1122	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel
Strand 3	B	1113	1114	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	23	first strand
Strand 2	I	78	84	anti-parallel
Strand 3	I	69	73	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	45	51	anti-parallel
Strand 3	I	35	39	anti-parallel
Strand 4	I	93	97	anti-parallel
Strand 5	I	115	116	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	132	first strand
Strand 2	I	143	153	anti-parallel
Strand 3	I	184	193	anti-parallel
Strand 4	I	172	173	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	132	first strand
Strand 2	I	143	153	anti-parallel
Strand 3	I	184	193	anti-parallel
Strand 4	I	177	178	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	204	208	first strand
Strand 2	I	213	217	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	23	first strand
Strand 2	J	72	77	anti-parallel
Strand 3	J	64	69	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	51	first strand
Strand 2	J	35	39	anti-parallel
Strand 3	J	88	93	anti-parallel
Strand 4	J	99	100	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	122	first strand
Strand 2	J	134	139	anti-parallel
Strand 3	J	179	184	anti-parallel
Strand 4	J	164	165	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	195	196	first strand
Strand 2	J	209	210	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	199	201	first strand
Strand 2	J	204	206	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	718	first strand
Strand 2	C	1069	1076	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	723	727	first strand
Strand 2	C	1059	1064	anti-parallel
Strand 3	C	1053	1056	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	853	854	first strand
Strand 2	C	859	860	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1088	1090	first strand
Strand 2	C	1120	1122	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel
Strand 3	C	1113	1114	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	23	first strand
Strand 2	K	78	84	anti-parallel
Strand 3	K	69	73	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	60	first strand
Strand 2	K	45	51	anti-parallel
Strand 3	K	35	39	anti-parallel
Strand 4	K	95	97	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	132	first strand
Strand 2	K	143	153	anti-parallel
Strand 3	K	184	193	anti-parallel
Strand 4	K	172	173	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	132	first strand
Strand 2	K	143	153	anti-parallel
Strand 3	K	184	193	anti-parallel
Strand 4	K	177	178	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	204	208	first strand
Strand 2	K	213	217	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	51	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	88	93	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	122	first strand
Strand 2	L	134	139	anti-parallel
Strand 3	L	179	184	anti-parallel
Strand 4	L	162	166	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	195	196	first strand
Strand 2	L	209	210	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	199	201	first strand
Strand 2	L	204	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VLS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VLS