Analysis of interatomic Contacts of Structural Units in PDB entry:
9VM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VM2 entry

There are 2 chains in PDB entry 9VM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43THR 2019
B
 MET 1GLU 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 9VM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 63Right-handed alpha
Helix 2
AA2
A
72 77Right-handed alpha
Helix 3
AA3
A
106 118Right-handed alpha
Helix 4
AA4
A
138 146Right-handed alpha
Helix 5
AA5
A
204 208Right-handed 310
Helix 6
AA6
A
211 224Right-handed alpha
Helix 7
AA7
A
230 234Right-handed 310
Helix 8
AA8
A
303 309Right-handed alpha
Helix 9
AA9
A
317 321Right-handed 310
Helix 10
AB1
A
382 387Right-handed alpha
Helix 11
AB2
A
401 407Right-handed alpha
Helix 12
AB3
A
468 480Right-handed alpha
Helix 13
AB4
A
483 488Right-handed alpha
Helix 14
AB5
A
721 737Right-handed alpha
Helix 15
AB6
A
749 751Right-handed 310
Helix 16
AB7
A
752 764Right-handed alpha
Helix 17
AB8
A
765 767Right-handed 310
Helix 18
AB9
A
768 774Right-handed alpha
Helix 19
AC1
A
775 789Right-handed alpha
Helix 20
AC2
A
800 819Right-handed alpha
Helix 21
AC3
A
820 823Right-handed 310
Helix 22
AC4
A
829 838Right-handed alpha
Helix 23
AC5
A
898 903Right-handed alpha
Helix 24
AC6
A
907 918Right-handed alpha
Helix 25
AC7
A
920 930Right-handed alpha
Helix 26
AC8
A
930 949Right-handed alpha
Helix 27
AC9
A
961 982Right-handed alpha
Helix 28
AD1
A
986 1005Right-handed alpha
Helix 29
AD2
A
1009 1030Right-handed alpha
Helix 30
AD3
A
1034 1050Right-handed alpha
Helix 31
AD4
A
1055 1059Right-handed 310
Helix 32
AD5
A
1090 1095Right-handed 310
Helix 33
AD6
A
1100 1107Right-handed alpha
Helix 34
AD7
A
1107 1120Right-handed alpha
Helix 35
AD8
A
1128 1149Right-handed alpha
Helix 36
AD9
A
1150 1153Right-handed 310
Helix 37
AE1
A
1154 1166Right-handed alpha
Helix 38
AE2
A
1166 1174Right-handed alpha
Helix 39
AE3
A
1175 1179Right-handed 310
Helix 40
AE4
A
1246 1264Right-handed alpha
Helix 41
AE5
A
1265 1275Right-handed alpha
Helix 42
AE6
A
1277 1295Right-handed alpha
Helix 43
AE7
A
1300 1305Right-handed 310
Helix 44
AE8
A
1370 1404Right-handed alpha
Helix 45
AE9
A
1408 1426Right-handed alpha
Helix 46
AF1
A
1429 1447Right-handed alpha
Helix 47
AF2
A
1447 1453Right-handed alpha
Helix 48
AF3
A
1455 1469Right-handed alpha
Helix 49
AF4
A
1474 1495Right-handed alpha
Helix 50
AF5
A
1499 1517Right-handed alpha
Helix 51
AF6
A
1522 1538Right-handed alpha
Helix 52
AF7
A
1540 1545Right-handed 310
Helix 53
AF8
A
1546 1571Right-handed alpha
Helix 54
AF9
A
1574 1589Right-handed alpha
Helix 55
AG1
A
1592 1609Right-handed alpha
Helix 56
AG2
A
1612 1635Right-handed alpha
Helix 57
AG3
A
1643 1648Right-handed 310
Helix 58
AG4
A
1651 1657Right-handed 310
Helix 59
AG5
A
1679 1698Right-handed alpha
Helix 60
AG6
A
1700 1716Right-handed alpha
Helix 61
AG7
A
1719 1740Right-handed alpha
Helix 62
AG8
A
1758 1765Right-handed 310
Helix 63
AG9
A
1778 1795Right-handed alpha
Helix 64
AH1
A
1809 1813Right-handed 310
Helix 65
AH2
A
1832 1837Right-handed alpha
Helix 66
AH3
A
1841 1845Right-handed 310
Helix 67
AH4
A
1865 1869Right-handed 310
Helix 68
AH5
A
1900 1921Right-handed alpha
Helix 69
AH6
A
1926 1939Right-handed alpha
Helix 70
AH7
A
1945 1955Right-handed alpha
Helix 71
AH8
A
1960 1992Right-handed alpha
Helix 72
AH9
A
1993 1995Right-handed 310
Helix 73
AI1
A
1996 2019Right-handed alpha
Helix 74
AI2
B
15 25Right-handed alpha
Helix 75
AI3
B
61 65Right-handed 310
Helix 76
AI4
B
67 72Right-handed 310
Helix 77
AI5
B
86 96Right-handed alpha
Helix 78
AI6
B
96 105Right-handed alpha
Helix 79
AI7
B
122 132Right-handed alpha
Helix 80
AI8
B
138 149Right-handed alpha
Helix 81
AI9
B
164 176Right-handed alpha
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There are 14 sheets in PDB entry 9VM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
120 125anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 499first strand
Strand 2
A
262 269anti-parallel
Strand 3
A
324 326anti-parallel
Strand 4
A
529 531parallel
Strand 5
A
510 511parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
279 282anti-parallel
Strand 3
A
337 342anti-parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
460 461anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
391 392anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 622first strand
Strand 2
A
549 558anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
670 674anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 603first strand
Strand 2
A
570 577anti-parallel
Strand 3
A
632 639anti-parallel
Strand 4
A
656 660anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
598 599anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
666 667anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
792 793first strand
Strand 2
A
796 797anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1750 1752first strand
Strand 2
A
1771 1773anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1767 1768first strand
Strand 2
A
1754 1757anti-parallel
Strand 3
A
1818 1822anti-parallel
Strand 4
A
1799 1800parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1826 1827first strand
Strand 2
A
1850 1852anti-parallel
Strand 3
A
1870 1878anti-parallel
Strand 4
A
1855 1856anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1826 1827first strand
Strand 2
A
1850 1852anti-parallel
Strand 3
A
1870 1878anti-parallel
Strand 4
A
1891 1898anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
79 83parallel
Strand 5
B
111 115parallel
Strand 6
B
154 156parallel
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