Analysis of interatomic Contacts of Structural Units in PDB entry:
9VM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VM3 entry

There are 4 chains in PDB entry 9VM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 43	THR 2019
B	MET 1	GLU 178
C	LEU 43	THR 2019
D	MET 1	GLU 178

There are164 helices in PDB entry 9VM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	63	Right-handed alpha
Helix 2	AA2	A	71	75	Right-handed 310
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	127	131	Right-handed 310
Helix 5	AA5	A	138	147	Right-handed alpha
Helix 6	AA6	A	204	208	Right-handed 310
Helix 7	AA7	A	211	224	Right-handed alpha
Helix 8	AA8	A	239	243	Right-handed 310
Helix 9	AA9	A	302	310	Right-handed alpha
Helix 10	AB1	A	318	322	Right-handed 310
Helix 11	AB2	A	381	387	Right-handed alpha
Helix 12	AB3	A	401	409	Right-handed alpha
Helix 13	AB4	A	468	480	Right-handed alpha
Helix 14	AB5	A	483	488	Right-handed alpha
Helix 15	AB6	A	699	704	Right-handed alpha
Helix 16	AB7	A	721	737	Right-handed alpha
Helix 17	AB8	A	752	764	Right-handed alpha
Helix 18	AB9	A	765	767	Right-handed 310
Helix 19	AC1	A	768	789	Right-handed alpha
Helix 20	AC2	A	800	819	Right-handed alpha
Helix 21	AC3	A	820	823	Right-handed 310
Helix 22	AC4	A	829	838	Right-handed alpha
Helix 23	AC5	A	899	904	Right-handed alpha
Helix 24	AC6	A	907	919	Right-handed alpha
Helix 25	AC7	A	920	931	Right-handed alpha
Helix 26	AC8	A	931	950	Right-handed alpha
Helix 27	AC9	A	955	959	Right-handed 310
Helix 28	AD1	A	961	982	Right-handed alpha
Helix 29	AD2	A	986	1006	Right-handed alpha
Helix 30	AD3	A	1009	1029	Right-handed alpha
Helix 31	AD4	A	1033	1050	Right-handed alpha
Helix 32	AD5	A	1051	1059	Right-handed 310
Helix 33	AD6	A	1092	1097	Right-handed alpha
Helix 34	AD7	A	1100	1107	Right-handed alpha
Helix 35	AD8	A	1107	1122	Right-handed alpha
Helix 36	AD9	A	1128	1149	Right-handed alpha
Helix 37	AE1	A	1150	1153	Right-handed 310
Helix 38	AE2	A	1154	1164	Right-handed alpha
Helix 39	AE3	A	1166	1176	Right-handed alpha
Helix 40	AE4	A	1177	1179	Right-handed 310
Helix 41	AE5	A	1246	1263	Right-handed alpha
Helix 42	AE6	A	1265	1275	Right-handed alpha
Helix 43	AE7	A	1277	1295	Right-handed alpha
Helix 44	AE8	A	1298	1307	Right-handed alpha
Helix 45	AE9	A	1370	1404	Right-handed alpha
Helix 46	AF1	A	1408	1426	Right-handed alpha
Helix 47	AF2	A	1429	1447	Right-handed alpha
Helix 48	AF3	A	1448	1453	Right-handed alpha
Helix 49	AF4	A	1456	1471	Right-handed alpha
Helix 50	AF5	A	1474	1497	Right-handed alpha
Helix 51	AF6	A	1500	1517	Right-handed alpha
Helix 52	AF7	A	1521	1538	Right-handed alpha
Helix 53	AF8	A	1540	1545	Right-handed 310
Helix 54	AF9	A	1546	1571	Right-handed alpha
Helix 55	AG1	A	1574	1589	Right-handed alpha
Helix 56	AG2	A	1592	1611	Right-handed alpha
Helix 57	AG3	A	1612	1635	Right-handed alpha
Helix 58	AG4	A	1644	1648	Right-handed 310
Helix 59	AG5	A	1651	1658	Right-handed 310
Helix 60	AG6	A	1679	1697	Right-handed alpha
Helix 61	AG7	A	1699	1717	Right-handed alpha
Helix 62	AG8	A	1719	1741	Right-handed alpha
Helix 63	AG9	A	1758	1765	Right-handed 310
Helix 64	AH1	A	1778	1793	Right-handed alpha
Helix 65	AH2	A	1809	1813	Right-handed 310
Helix 66	AH3	A	1830	1837	Right-handed alpha
Helix 67	AH4	A	1839	1844	Right-handed alpha
Helix 68	AH5	A	1865	1869	Right-handed 310
Helix 69	AH6	A	1900	1922	Right-handed alpha
Helix 70	AH7	A	1926	1939	Right-handed alpha
Helix 71	AH8	A	1945	1955	Right-handed alpha
Helix 72	AH9	A	1960	1992	Right-handed alpha
Helix 73	AI1	A	1995	2015	Right-handed alpha
Helix 74	AI2	B	15	25	Right-handed alpha
Helix 75	AI3	B	61	67	Right-handed 310
Helix 76	AI4	B	68	72	Right-handed 310
Helix 77	AI5	B	86	96	Right-handed alpha
Helix 78	AI6	B	97	105	Right-handed alpha
Helix 79	AI7	B	116	121	Right-handed alpha
Helix 80	AI8	B	122	132	Right-handed alpha
Helix 81	AI9	B	138	150	Right-handed alpha
Helix 82	AJ1	B	164	178	Right-handed alpha
Helix 83	AJ2	C	55	63	Right-handed alpha
Helix 84	AJ3	C	71	75	Right-handed 310
Helix 85	AJ4	C	106	118	Right-handed alpha
Helix 86	AJ5	C	127	131	Right-handed 310
Helix 87	AJ6	C	138	147	Right-handed alpha
Helix 88	AJ7	C	204	208	Right-handed 310
Helix 89	AJ8	C	211	224	Right-handed alpha
Helix 90	AJ9	C	239	243	Right-handed 310
Helix 91	AK1	C	302	310	Right-handed alpha
Helix 92	AK2	C	318	322	Right-handed 310
Helix 93	AK3	C	381	387	Right-handed alpha
Helix 94	AK4	C	401	409	Right-handed alpha
Helix 95	AK5	C	468	480	Right-handed alpha
Helix 96	AK6	C	483	488	Right-handed alpha
Helix 97	AK7	C	699	704	Right-handed alpha
Helix 98	AK8	C	721	737	Right-handed alpha
Helix 99	AK9	C	752	764	Right-handed alpha
Helix 100	AL1	C	765	767	Right-handed 310
Helix 101	AL2	C	768	789	Right-handed alpha
Helix 102	AL3	C	800	819	Right-handed alpha
Helix 103	AL4	C	820	823	Right-handed 310
Helix 104	AL5	C	829	838	Right-handed alpha
Helix 105	AL6	C	899	904	Right-handed alpha
Helix 106	AL7	C	907	919	Right-handed alpha
Helix 107	AL8	C	920	931	Right-handed alpha
Helix 108	AL9	C	931	950	Right-handed alpha
Helix 109	AM1	C	955	959	Right-handed 310
Helix 110	AM2	C	961	982	Right-handed alpha
Helix 111	AM3	C	986	1006	Right-handed alpha
Helix 112	AM4	C	1009	1029	Right-handed alpha
Helix 113	AM5	C	1033	1050	Right-handed alpha
Helix 114	AM6	C	1051	1059	Right-handed 310
Helix 115	AM7	C	1092	1097	Right-handed alpha
Helix 116	AM8	C	1100	1107	Right-handed alpha
Helix 117	AM9	C	1107	1122	Right-handed alpha
Helix 118	AN1	C	1128	1149	Right-handed alpha
Helix 119	AN2	C	1150	1153	Right-handed 310
Helix 120	AN3	C	1154	1164	Right-handed alpha
Helix 121	AN4	C	1166	1176	Right-handed alpha
Helix 122	AN5	C	1177	1179	Right-handed 310
Helix 123	AN6	C	1246	1263	Right-handed alpha
Helix 124	AN7	C	1265	1275	Right-handed alpha
Helix 125	AN8	C	1277	1295	Right-handed alpha
Helix 126	AN9	C	1298	1307	Right-handed alpha
Helix 127	AO1	C	1370	1404	Right-handed alpha
Helix 128	AO2	C	1408	1426	Right-handed alpha
Helix 129	AO3	C	1429	1447	Right-handed alpha
Helix 130	AO4	C	1448	1453	Right-handed alpha
Helix 131	AO5	C	1456	1471	Right-handed alpha
Helix 132	AO6	C	1474	1497	Right-handed alpha
Helix 133	AO7	C	1500	1517	Right-handed alpha
Helix 134	AO8	C	1521	1538	Right-handed alpha
Helix 135	AO9	C	1540	1545	Right-handed 310
Helix 136	AP1	C	1546	1571	Right-handed alpha
Helix 137	AP2	C	1574	1589	Right-handed alpha
Helix 138	AP3	C	1592	1611	Right-handed alpha
Helix 139	AP4	C	1612	1635	Right-handed alpha
Helix 140	AP5	C	1644	1648	Right-handed 310
Helix 141	AP6	C	1651	1658	Right-handed 310
Helix 142	AP7	C	1679	1697	Right-handed alpha
Helix 143	AP8	C	1699	1717	Right-handed alpha
Helix 144	AP9	C	1719	1741	Right-handed alpha
Helix 145	AQ1	C	1758	1765	Right-handed 310
Helix 146	AQ2	C	1778	1793	Right-handed alpha
Helix 147	AQ3	C	1809	1813	Right-handed 310
Helix 148	AQ4	C	1830	1837	Right-handed alpha
Helix 149	AQ5	C	1839	1844	Right-handed alpha
Helix 150	AQ6	C	1865	1869	Right-handed 310
Helix 151	AQ7	C	1900	1922	Right-handed alpha
Helix 152	AQ8	C	1926	1939	Right-handed alpha
Helix 153	AQ9	C	1945	1955	Right-handed alpha
Helix 154	AR1	C	1960	1992	Right-handed alpha
Helix 155	AR2	C	1995	2015	Right-handed alpha
Helix 156	AR3	D	15	25	Right-handed alpha
Helix 157	AR4	D	61	67	Right-handed 310
Helix 158	AR5	D	68	72	Right-handed 310
Helix 159	AR6	D	86	96	Right-handed alpha
Helix 160	AR7	D	97	105	Right-handed alpha
Helix 161	AR8	D	116	121	Right-handed alpha
Helix 162	AR9	D	122	132	Right-handed alpha
Helix 163	AS1	D	138	150	Right-handed alpha
Helix 164	AS2	D	164	178	Right-handed alpha

There are 20 sheets in PDB entry 9VM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	122	125	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	502	first strand
Strand 2	A	261	265	anti-parallel
Strand 3	A	324	327	anti-parallel
Strand 4	A	529	531	parallel
Strand 5	A	510	511	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	277	285	anti-parallel
Strand 3	A	297	298	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	277	285	anti-parallel
Strand 3	A	336	345	anti-parallel
Strand 4	A	391	400	anti-parallel
Strand 5	A	460	461	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	622	first strand
Strand 2	A	549	555	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	670	674	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	603	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	A	632	639	anti-parallel
Strand 4	A	655	660	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	741	742	first strand
Strand 2	A	747	748	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	793	first strand
Strand 2	A	796	797	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1819	1824	first strand
Strand 2	A	1751	1757	anti-parallel
Strand 3	A	1768	1772	anti-parallel
Strand 4	A	1888	1898	anti-parallel
Strand 5	A	1870	1882	anti-parallel
Strand 6	A	1847	1856	anti-parallel
Strand 7	A	1826	1827	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	49	56	anti-parallel
Strand 3	B	3	10	parallel
Strand 4	B	77	83	parallel
Strand 5	B	110	115	parallel
Strand 6	B	154	156	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	122	125	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	502	first strand
Strand 2	C	261	265	anti-parallel
Strand 3	C	324	327	anti-parallel
Strand 4	C	529	531	parallel
Strand 5	C	510	511	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	293	first strand
Strand 2	C	277	285	anti-parallel
Strand 3	C	297	298	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	293	first strand
Strand 2	C	277	285	anti-parallel
Strand 3	C	336	345	anti-parallel
Strand 4	C	391	400	anti-parallel
Strand 5	C	460	461	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	622	first strand
Strand 2	C	549	555	anti-parallel
Strand 3	C	707	715	anti-parallel
Strand 4	C	670	674	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	602	603	first strand
Strand 2	C	570	577	anti-parallel
Strand 3	C	632	639	anti-parallel
Strand 4	C	655	660	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	741	742	first strand
Strand 2	C	747	748	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	793	first strand
Strand 2	C	796	797	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1819	1824	first strand
Strand 2	C	1751	1757	anti-parallel
Strand 3	C	1768	1772	anti-parallel
Strand 4	C	1888	1898	anti-parallel
Strand 5	C	1870	1882	anti-parallel
Strand 6	C	1847	1856	anti-parallel
Strand 7	C	1826	1827	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	46	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	3	10	parallel
Strand 4	D	77	83	parallel
Strand 5	D	110	115	parallel
Strand 6	D	154	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VM3