Analysis of interatomic Contacts of Structural Units in PDB entry:
9VM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VM4 entry

There are 2 chains in PDB entry 9VM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43THR 2019
B
 MET 1LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 9VM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 62Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
106 118Right-handed alpha
Helix 4
AA4
A
127 131Right-handed 310
Helix 5
AA5
A
138 146Right-handed alpha
Helix 6
AA6
A
204 208Right-handed 310
Helix 7
AA7
A
211 224Right-handed alpha
Helix 8
AA8
A
230 235Right-handed alpha
Helix 9
AA9
A
239 243Right-handed 310
Helix 10
AB1
A
303 309Right-handed alpha
Helix 11
AB2
A
317 321Right-handed 310
Helix 12
AB3
A
381 385Right-handed 310
Helix 13
AB4
A
401 408Right-handed alpha
Helix 14
AB5
A
468 481Right-handed alpha
Helix 15
AB6
A
581 585Right-handed 310
Helix 16
AB7
A
721 737Right-handed alpha
Helix 17
AB8
A
752 765Right-handed alpha
Helix 18
AB9
A
768 789Right-handed alpha
Helix 19
AC1
A
800 819Right-handed alpha
Helix 20
AC2
A
820 823Right-handed 310
Helix 21
AC3
A
829 838Right-handed alpha
Helix 22
AC4
A
899 904Right-handed alpha
Helix 23
AC5
A
907 918Right-handed alpha
Helix 24
AC6
A
920 928Right-handed alpha
Helix 25
AC7
A
930 949Right-handed alpha
Helix 26
AC8
A
955 959Right-handed 310
Helix 27
AC9
A
961 982Right-handed alpha
Helix 28
AD1
A
986 1005Right-handed alpha
Helix 29
AD2
A
1009 1030Right-handed alpha
Helix 30
AD3
A
1033 1050Right-handed alpha
Helix 31
AD4
A
1055 1059Right-handed 310
Helix 32
AD5
A
1090 1097Right-handed alpha
Helix 33
AD6
A
1100 1107Right-handed alpha
Helix 34
AD7
A
1108 1122Right-handed alpha
Helix 35
AD8
A
1128 1149Right-handed alpha
Helix 36
AD9
A
1150 1153Right-handed 310
Helix 37
AE1
A
1154 1163Right-handed alpha
Helix 38
AE2
A
1166 1174Right-handed alpha
Helix 39
AE3
A
1175 1179Right-handed 310
Helix 40
AE4
A
1246 1264Right-handed alpha
Helix 41
AE5
A
1265 1275Right-handed alpha
Helix 42
AE6
A
1277 1296Right-handed alpha
Helix 43
AE7
A
1300 1305Right-handed alpha
Helix 44
AE8
A
1370 1404Right-handed alpha
Helix 45
AE9
A
1409 1426Right-handed alpha
Helix 46
AF1
A
1429 1447Right-handed alpha
Helix 47
AF2
A
1448 1453Right-handed alpha
Helix 48
AF3
A
1455 1471Right-handed alpha
Helix 49
AF4
A
1474 1496Right-handed alpha
Helix 50
AF5
A
1499 1517Right-handed alpha
Helix 51
AF6
A
1521 1538Right-handed alpha
Helix 52
AF7
A
1546 1571Right-handed alpha
Helix 53
AF8
A
1576 1589Right-handed alpha
Helix 54
AF9
A
1592 1609Right-handed alpha
Helix 55
AG1
A
1613 1633Right-handed alpha
Helix 56
AG2
A
1642 1648Right-handed 310
Helix 57
AG3
A
1651 1658Right-handed 310
Helix 58
AG4
A
1681 1698Right-handed alpha
Helix 59
AG5
A
1699 1718Right-handed alpha
Helix 60
AG6
A
1719 1740Right-handed alpha
Helix 61
AG7
A
1761 1765Right-handed 310
Helix 62
AG8
A
1778 1795Right-handed alpha
Helix 63
AG9
A
1830 1837Right-handed alpha
Helix 64
AH1
A
1840 1844Right-handed 310
Helix 65
AH2
A
1900 1921Right-handed alpha
Helix 66
AH3
A
1926 1939Right-handed alpha
Helix 67
AH4
A
1945 1955Right-handed alpha
Helix 68
AH5
A
1963 1992Right-handed alpha
Helix 69
AH6
A
1996 2019Right-handed alpha
Helix 70
AH7
B
15 25Right-handed alpha
Helix 71
AH8
B
62 72Right-handed 310
Helix 72
AH9
B
86 105Right-handed alpha
Helix 73
AI1
B
116 122Right-handed alpha
Helix 74
AI2
B
122 132Right-handed alpha
Helix 75
AI3
B
138 149Right-handed alpha
Helix 76
AI4
B
164 177Right-handed alpha
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There are 14 sheets in PDB entry 9VM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
122 125anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 265first strand
Strand 2
A
498 502anti-parallel
Strand 3
A
452 454anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
277 285anti-parallel
Strand 3
A
336 345anti-parallel
Strand 4
A
391 399anti-parallel
Strand 5
A
460 461anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
530 531parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
517 518anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 622first strand
Strand 2
A
549 558anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
671 673anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 577first strand
Strand 2
A
632 640anti-parallel
Strand 3
A
651 652anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 577first strand
Strand 2
A
632 640anti-parallel
Strand 3
A
656 660anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
598 599anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
741 742first strand
Strand 2
A
747 748anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
792 793first strand
Strand 2
A
796 797anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1799 1801first strand
Strand 2
A
1818 1824parallel
Strand 3
A
1750 1756anti-parallel
Strand 4
A
1768 1773anti-parallel
Strand 5
A
1888 1899anti-parallel
Strand 6
A
1871 1878anti-parallel
Strand 7
A
1849 1851anti-parallel
Strand 8
A
1826 1828anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1799 1801first strand
Strand 2
A
1818 1824parallel
Strand 3
A
1750 1756anti-parallel
Strand 4
A
1768 1773anti-parallel
Strand 5
A
1888 1899anti-parallel
Strand 6
A
1871 1878anti-parallel
Strand 7
A
1854 1855anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
50 56anti-parallel
Strand 3
B
5 10parallel
Strand 4
B
77 81parallel
Strand 5
B
110 114parallel
Strand 6
B
153 156parallel
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