Analysis of interatomic Contacts of Structural Units in PDB entry:
9VM5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VM5 entry

There are 4 chains in PDB entry 9VM5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 43	THR 2019
B	MET 1	LEU 177
C	LEU 43	THR 2019
D	MET 1	LEU 177

There are156 helices in PDB entry 9VM5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	63	Right-handed alpha
Helix 2	AA2	A	71	76	Right-handed alpha
Helix 3	AA3	A	106	116	Right-handed alpha
Helix 4	AA4	A	127	131	Right-handed 310
Helix 5	AA5	A	138	146	Right-handed alpha
Helix 6	AA6	A	203	208	Right-handed 310
Helix 7	AA7	A	211	225	Right-handed alpha
Helix 8	AA8	A	230	235	Right-handed alpha
Helix 9	AA9	A	239	243	Right-handed 310
Helix 10	AB1	A	303	309	Right-handed alpha
Helix 11	AB2	A	318	322	Right-handed 310
Helix 12	AB3	A	381	387	Right-handed alpha
Helix 13	AB4	A	401	409	Right-handed alpha
Helix 14	AB5	A	468	481	Right-handed alpha
Helix 15	AB6	A	483	489	Right-handed alpha
Helix 16	AB7	A	581	585	Right-handed 310
Helix 17	AB8	A	721	737	Right-handed alpha
Helix 18	AB9	A	752	765	Right-handed alpha
Helix 19	AC1	A	768	789	Right-handed alpha
Helix 20	AC2	A	800	820	Right-handed alpha
Helix 21	AC3	A	821	823	Right-handed 310
Helix 22	AC4	A	829	839	Right-handed alpha
Helix 23	AC5	A	899	904	Right-handed alpha
Helix 24	AC6	A	907	918	Right-handed alpha
Helix 25	AC7	A	920	950	Right-handed alpha
Helix 26	AC8	A	961	983	Right-handed alpha
Helix 27	AC9	A	986	1006	Right-handed alpha
Helix 28	AD1	A	1009	1029	Right-handed alpha
Helix 29	AD2	A	1034	1050	Right-handed alpha
Helix 30	AD3	A	1051	1059	Right-handed 310
Helix 31	AD4	A	1090	1097	Right-handed alpha
Helix 32	AD5	A	1100	1107	Right-handed alpha
Helix 33	AD6	A	1108	1121	Right-handed alpha
Helix 34	AD7	A	1128	1149	Right-handed alpha
Helix 35	AD8	A	1154	1166	Right-handed alpha
Helix 36	AD9	A	1167	1175	Right-handed alpha
Helix 37	AE1	A	1246	1264	Right-handed alpha
Helix 38	AE2	A	1265	1276	Right-handed alpha
Helix 39	AE3	A	1277	1295	Right-handed alpha
Helix 40	AE4	A	1298	1304	Right-handed alpha
Helix 41	AE5	A	1370	1404	Right-handed alpha
Helix 42	AE6	A	1409	1426	Right-handed alpha
Helix 43	AE7	A	1429	1447	Right-handed alpha
Helix 44	AE8	A	1448	1452	Right-handed 310
Helix 45	AE9	A	1456	1471	Right-handed alpha
Helix 46	AF1	A	1474	1496	Right-handed alpha
Helix 47	AF2	A	1499	1517	Right-handed alpha
Helix 48	AF3	A	1521	1538	Right-handed alpha
Helix 49	AF4	A	1540	1545	Right-handed 310
Helix 50	AF5	A	1546	1571	Right-handed alpha
Helix 51	AF6	A	1576	1586	Right-handed alpha
Helix 52	AF7	A	1592	1611	Right-handed alpha
Helix 53	AF8	A	1612	1635	Right-handed alpha
Helix 54	AF9	A	1642	1648	Right-handed 310
Helix 55	AG1	A	1653	1659	Right-handed 310
Helix 56	AG2	A	1679	1697	Right-handed alpha
Helix 57	AG3	A	1699	1718	Right-handed alpha
Helix 58	AG4	A	1719	1740	Right-handed alpha
Helix 59	AG5	A	1741	1743	Right-handed 310
Helix 60	AG6	A	1758	1765	Right-handed 310
Helix 61	AG7	A	1778	1795	Right-handed alpha
Helix 62	AG8	A	1809	1813	Right-handed 310
Helix 63	AG9	A	1830	1837	Right-handed alpha
Helix 64	AH1	A	1841	1845	Right-handed 310
Helix 65	AH2	A	1865	1869	Right-handed 310
Helix 66	AH3	A	1900	1921	Right-handed alpha
Helix 67	AH4	A	1926	1939	Right-handed alpha
Helix 68	AH5	A	1945	1955	Right-handed alpha
Helix 69	AH6	A	1960	1992	Right-handed alpha
Helix 70	AH7	A	1996	2019	Right-handed alpha
Helix 71	AH8	B	15	25	Right-handed alpha
Helix 72	AH9	B	67	71	Right-handed 310
Helix 73	AI1	B	86	96	Right-handed alpha
Helix 74	AI2	B	96	103	Right-handed alpha
Helix 75	AI3	B	116	122	Right-handed alpha
Helix 76	AI4	B	122	131	Right-handed alpha
Helix 77	AI5	B	138	149	Right-handed alpha
Helix 78	AI6	B	164	177	Right-handed alpha
Helix 79	AI7	C	55	63	Right-handed alpha
Helix 80	AI8	C	71	76	Right-handed alpha
Helix 81	AI9	C	106	116	Right-handed alpha
Helix 82	AJ1	C	127	131	Right-handed 310
Helix 83	AJ2	C	138	146	Right-handed alpha
Helix 84	AJ3	C	203	208	Right-handed 310
Helix 85	AJ4	C	211	225	Right-handed alpha
Helix 86	AJ5	C	230	235	Right-handed alpha
Helix 87	AJ6	C	239	243	Right-handed 310
Helix 88	AJ7	C	303	309	Right-handed alpha
Helix 89	AJ8	C	318	322	Right-handed 310
Helix 90	AJ9	C	381	387	Right-handed alpha
Helix 91	AK1	C	401	409	Right-handed alpha
Helix 92	AK2	C	468	481	Right-handed alpha
Helix 93	AK3	C	483	489	Right-handed alpha
Helix 94	AK4	C	581	585	Right-handed 310
Helix 95	AK5	C	721	737	Right-handed alpha
Helix 96	AK6	C	752	765	Right-handed alpha
Helix 97	AK7	C	768	789	Right-handed alpha
Helix 98	AK8	C	800	820	Right-handed alpha
Helix 99	AK9	C	821	823	Right-handed 310
Helix 100	AL1	C	829	839	Right-handed alpha
Helix 101	AL2	C	899	904	Right-handed alpha
Helix 102	AL3	C	907	918	Right-handed alpha
Helix 103	AL4	C	920	950	Right-handed alpha
Helix 104	AL5	C	961	983	Right-handed alpha
Helix 105	AL6	C	986	1006	Right-handed alpha
Helix 106	AL7	C	1009	1029	Right-handed alpha
Helix 107	AL8	C	1034	1050	Right-handed alpha
Helix 108	AL9	C	1051	1059	Right-handed 310
Helix 109	AM1	C	1090	1097	Right-handed alpha
Helix 110	AM2	C	1100	1107	Right-handed alpha
Helix 111	AM3	C	1108	1121	Right-handed alpha
Helix 112	AM4	C	1128	1149	Right-handed alpha
Helix 113	AM5	C	1154	1166	Right-handed alpha
Helix 114	AM6	C	1167	1175	Right-handed alpha
Helix 115	AM7	C	1246	1264	Right-handed alpha
Helix 116	AM8	C	1265	1276	Right-handed alpha
Helix 117	AM9	C	1277	1295	Right-handed alpha
Helix 118	AN1	C	1298	1304	Right-handed alpha
Helix 119	AN2	C	1370	1404	Right-handed alpha
Helix 120	AN3	C	1409	1426	Right-handed alpha
Helix 121	AN4	C	1429	1447	Right-handed alpha
Helix 122	AN5	C	1448	1452	Right-handed 310
Helix 123	AN6	C	1456	1471	Right-handed alpha
Helix 124	AN7	C	1474	1496	Right-handed alpha
Helix 125	AN8	C	1499	1517	Right-handed alpha
Helix 126	AN9	C	1521	1538	Right-handed alpha
Helix 127	AO1	C	1540	1545	Right-handed 310
Helix 128	AO2	C	1546	1571	Right-handed alpha
Helix 129	AO3	C	1576	1586	Right-handed alpha
Helix 130	AO4	C	1592	1611	Right-handed alpha
Helix 131	AO5	C	1612	1635	Right-handed alpha
Helix 132	AO6	C	1642	1648	Right-handed 310
Helix 133	AO7	C	1653	1659	Right-handed 310
Helix 134	AO8	C	1679	1697	Right-handed alpha
Helix 135	AO9	C	1699	1718	Right-handed alpha
Helix 136	AP1	C	1719	1740	Right-handed alpha
Helix 137	AP2	C	1741	1743	Right-handed 310
Helix 138	AP3	C	1758	1765	Right-handed 310
Helix 139	AP4	C	1778	1795	Right-handed alpha
Helix 140	AP5	C	1809	1813	Right-handed 310
Helix 141	AP6	C	1830	1837	Right-handed alpha
Helix 142	AP7	C	1841	1845	Right-handed 310
Helix 143	AP8	C	1865	1869	Right-handed 310
Helix 144	AP9	C	1900	1921	Right-handed alpha
Helix 145	AQ1	C	1926	1939	Right-handed alpha
Helix 146	AQ2	C	1945	1955	Right-handed alpha
Helix 147	AQ3	C	1960	1992	Right-handed alpha
Helix 148	AQ4	C	1996	2019	Right-handed alpha
Helix 149	AQ5	D	15	25	Right-handed alpha
Helix 150	AQ6	D	67	71	Right-handed 310
Helix 151	AQ7	D	86	96	Right-handed alpha
Helix 152	AQ8	D	96	103	Right-handed alpha
Helix 153	AQ9	D	116	122	Right-handed alpha
Helix 154	AR1	D	122	131	Right-handed alpha
Helix 155	AR2	D	138	149	Right-handed alpha
Helix 156	AR3	D	164	177	Right-handed alpha

There are 22 sheets in PDB entry 9VM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	120	125	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	495	502	anti-parallel
Strand 3	A	261	269	anti-parallel
Strand 4	A	324	327	anti-parallel
Strand 5	A	529	531	parallel
Strand 6	A	510	511	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	279	285	anti-parallel
Strand 3	A	296	298	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	279	285	anti-parallel
Strand 3	A	336	343	anti-parallel
Strand 4	A	393	400	anti-parallel
Strand 5	A	459	461	anti-parallel
Strand 6	A	491	492	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	622	first strand
Strand 2	A	549	555	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	670	674	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	603	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	A	632	639	anti-parallel
Strand 4	A	656	657	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	741	742	first strand
Strand 2	A	747	748	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	793	first strand
Strand 2	A	796	797	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1820	1824	first strand
Strand 2	A	1750	1756	anti-parallel
Strand 3	A	1767	1773	anti-parallel
Strand 4	A	1888	1899	anti-parallel
Strand 5	A	1871	1878	anti-parallel
Strand 6	A	1849	1855	anti-parallel
Strand 7	A	1826	1827	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	49	56	anti-parallel
Strand 3	B	4	9	parallel
Strand 4	B	77	80	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	111	115	parallel
Strand 3	B	153	157	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	120	125	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	454	first strand
Strand 2	C	495	502	anti-parallel
Strand 3	C	261	269	anti-parallel
Strand 4	C	324	327	anti-parallel
Strand 5	C	529	531	parallel
Strand 6	C	510	511	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	279	285	anti-parallel
Strand 3	C	296	298	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	279	285	anti-parallel
Strand 3	C	336	343	anti-parallel
Strand 4	C	393	400	anti-parallel
Strand 5	C	459	461	anti-parallel
Strand 6	C	491	492	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	622	first strand
Strand 2	C	549	555	anti-parallel
Strand 3	C	707	715	anti-parallel
Strand 4	C	670	674	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	602	603	first strand
Strand 2	C	570	577	anti-parallel
Strand 3	C	632	639	anti-parallel
Strand 4	C	656	657	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	741	742	first strand
Strand 2	C	747	748	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	793	first strand
Strand 2	C	796	797	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1820	1824	first strand
Strand 2	C	1750	1756	anti-parallel
Strand 3	C	1767	1773	anti-parallel
Strand 4	C	1888	1899	anti-parallel
Strand 5	C	1871	1878	anti-parallel
Strand 6	C	1849	1855	anti-parallel
Strand 7	C	1826	1827	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	46	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	4	9	parallel
Strand 4	D	77	80	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	111	115	parallel
Strand 3	D	153	157	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VM5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VM5