Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VMF entry

There are 2 chains in PDB entry 9VMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16ALA 309
B
 ASN 15PRO 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9VMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 27Right-handed 310
Helix 2
AA2
A
29 45Right-handed alpha
Helix 3
AA3
A
54 70Right-handed alpha
Helix 4
AA4
A
88 91Right-handed 310
Helix 5
AA5
A
92 99Right-handed alpha
Helix 6
AA6
A
102 114Right-handed alpha
Helix 7
AA7
A
153 159Right-handed 310
Helix 8
AA8
A
197 201Right-handed 310
Helix 9
AA9
A
263 268Right-handed alpha
Helix 10
AB1
A
269 275Right-handed alpha
Helix 11
AB2
A
277 284Right-handed alpha
Helix 12
AB3
A
300 305Right-handed 310
Helix 13
AB4
B
25 27Right-handed 310
Helix 14
AB5
B
29 45Right-handed alpha
Helix 15
AB6
B
54 70Right-handed alpha
Helix 16
AB7
B
88 91Right-handed 310
Helix 17
AB8
B
92 99Right-handed alpha
Helix 18
AB9
B
102 114Right-handed alpha
Helix 19
AC1
B
153 159Right-handed 310
Helix 20
AC2
B
197 201Right-handed 310
Helix 21
AC3
B
263 268Right-handed alpha
Helix 22
AC4
B
269 275Right-handed alpha
Helix 23
AC5
B
277 285Right-handed alpha
Helix 24
AC6
B
300 305Right-handed 310
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There are 6 sheets in PDB entry 9VMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
46 50parallel
Strand 3
A
225 229anti-parallel
Strand 4
A
175 181anti-parallel
Strand 5
A
246 254anti-parallel
Strand 6
A
133 142anti-parallel
Strand 7
A
82 86anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 121first strand
Strand 2
A
124 130anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
193 194anti-parallel
Strand 3
A
234 235anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
46 50parallel
Strand 3
B
225 229anti-parallel
Strand 4
B
175 181anti-parallel
Strand 5
B
246 254anti-parallel
Strand 6
B
133 142anti-parallel
Strand 7
B
82 86anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 121first strand
Strand 2
B
124 130anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
193 194anti-parallel
Strand 3
B
234 235anti-parallel
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