Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VMH entry

There are 2 chains in PDB entry 9VMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1127
B	ALA 455	SER 1127

There are 43 helices in PDB entry 9VMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	25	Right-handed alpha
Helix 2	AA2	A	39	44	Right-handed 310
Helix 3	AA3	A	56	62	Right-handed alpha
Helix 4	AA4	A	63	74	Right-handed alpha
Helix 5	AA5	A	89	96	Right-handed alpha
Helix 6	AA6	A	109	114	Right-handed alpha
Helix 7	AA7	A	115	118	Right-handed 310
Helix 8	AA8	A	119	125	Right-handed alpha
Helix 9	AA9	A	140	149	Right-handed alpha
Helix 10	AB1	A	176	193	Right-handed alpha
Helix 11	AB2	A	248	267	Right-handed alpha
Helix 12	AB3	A	296	305	Right-handed alpha
Helix 13	AB4	A	307	317	Right-handed alpha
Helix 14	AB5	A	398	413	Right-handed alpha
Helix 15	AB6	A	421	430	Right-handed alpha
Helix 16	AB7	A	431	437	Right-handed alpha
Helix 17	AB8	B	458	473	Right-handed alpha
Helix 18	AB9	B	484	489	Right-handed 310
Helix 19	AC1	B	501	521	Right-handed alpha
Helix 20	AC2	B	544	550	Right-handed alpha
Helix 21	AC3	B	551	559	Right-handed alpha
Helix 22	AC4	B	571	579	Right-handed alpha
Helix 23	AC5	B	583	595	Right-handed alpha
Helix 24	AC6	B	616	631	Right-handed alpha
Helix 25	AC7	B	647	658	Right-handed alpha
Helix 26	AC8	B	681	696	Right-handed alpha
Helix 27	AC9	B	710	725	Right-handed alpha
Helix 28	AD1	B	740	749	Right-handed alpha
Helix 29	AD2	B	759	763	Right-handed 310
Helix 30	AD3	B	770	778	Right-handed alpha
Helix 31	AD4	B	788	795	Right-handed alpha
Helix 32	AD5	B	795	806	Right-handed alpha
Helix 33	AD6	B	807	810	Right-handed 310
Helix 34	AD7	B	826	837	Right-handed alpha
Helix 35	AD8	B	842	861	Right-handed alpha
Helix 36	AD9	B	866	884	Right-handed alpha
Helix 37	AE1	B	888	893	Right-handed alpha
Helix 38	AE2	B	900	909	Right-handed alpha
Helix 39	AE3	B	921	929	Right-handed alpha
Helix 40	AE4	B	940	948	Right-handed alpha
Helix 41	AE5	B	951	963	Right-handed alpha
Helix 42	AE6	B	963	978	Right-handed alpha
Helix 43	AE7	B	984	990	Right-handed alpha

There are 12 sheets in PDB entry 9VMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	27	32	parallel
Strand 3	A	4	7	parallel
Strand 4	A	78	80	parallel
Strand 5	A	102	103	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	155	159	anti-parallel
Strand 3	A	197	201	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	241	first strand
Strand 2	A	221	233	anti-parallel
Strand 3	A	209	215	anti-parallel
Strand 4	A	272	277	anti-parallel
Strand 5	A	285	290	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	343	first strand
Strand 2	A	388	396	anti-parallel
Strand 3	A	369	372	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	414	416	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1011	1015	first strand
Strand 2	A	1025	1029	anti-parallel
Strand 3	A	1034	1038	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1061	1062	first strand
Strand 2	A	1124	1127	anti-parallel
Strand 3	A	1104	1109	anti-parallel
Strand 4	A	1079	1080	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1099	first strand
Strand 2	A	1085	1091	anti-parallel
Strand 3	A	1068	1072	anti-parallel
Strand 4	A	1114	1117	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	528	first strand
Strand 2	B	564	569	parallel
Strand 3	B	599	604	parallel
Strand 4	B	634	637	parallel
Strand 5	B	661	667	parallel
Strand 6	B	699	704	parallel
Strand 7	B	729	733	parallel
Strand 8	B	754	757	parallel
Strand 9	B	525	528	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	998	1003	first strand
Strand 2	B	1006	1015	anti-parallel
Strand 3	B	1023	1030	anti-parallel
Strand 4	B	1033	1040	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1062	1063	first strand
Strand 2	B	1122	1127	anti-parallel
Strand 3	B	1104	1109	anti-parallel
Strand 4	B	1079	1080	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1095	1099	first strand
Strand 2	B	1085	1090	anti-parallel
Strand 3	B	1068	1072	anti-parallel
Strand 4	B	1114	1117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMH