Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VMK entry

There are 2 chains in PDB entry 9VMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 26	PRO 810
B	VAL 26	PRO 810

There are 48 helices in PDB entry 9VMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	33	Right-handed 310
Helix 2	AA2	A	169	173	Right-handed 310
Helix 3	AA3	A	290	301	Right-handed alpha
Helix 4	AA4	A	358	363	Right-handed 310
Helix 5	AA5	A	369	397	Right-handed alpha
Helix 6	AA6	A	402	412	Right-handed alpha
Helix 7	AA7	A	414	419	Right-handed alpha
Helix 8	AA8	A	448	456	Right-handed alpha
Helix 9	AA9	A	456	463	Right-handed alpha
Helix 10	AB1	A	463	478	Right-handed alpha
Helix 11	AB2	A	489	492	Right-handed 310
Helix 12	AB3	A	532	536	Right-handed 310
Helix 13	AB4	A	538	554	Right-handed alpha
Helix 14	AB5	A	558	578	Right-handed alpha
Helix 15	AB6	A	606	627	Right-handed alpha
Helix 16	AB7	A	631	651	Right-handed alpha
Helix 17	AB8	A	672	681	Right-handed alpha
Helix 18	AB9	A	688	704	Right-handed alpha
Helix 19	AC1	A	707	711	Right-handed 310
Helix 20	AC2	A	730	734	Right-handed 310
Helix 21	AC3	A	737	750	Right-handed alpha
Helix 22	AC4	A	752	770	Right-handed alpha
Helix 23	AC5	A	792	795	Right-handed 310
Helix 24	AC6	A	796	805	Right-handed alpha
Helix 25	AC7	B	29	33	Right-handed 310
Helix 26	AC8	B	169	173	Right-handed 310
Helix 27	AC9	B	290	301	Right-handed alpha
Helix 28	AD1	B	358	363	Right-handed 310
Helix 29	AD2	B	369	397	Right-handed alpha
Helix 30	AD3	B	402	412	Right-handed alpha
Helix 31	AD4	B	414	419	Right-handed alpha
Helix 32	AD5	B	448	456	Right-handed alpha
Helix 33	AD6	B	456	463	Right-handed alpha
Helix 34	AD7	B	463	478	Right-handed alpha
Helix 35	AD8	B	489	492	Right-handed 310
Helix 36	AD9	B	532	536	Right-handed 310
Helix 37	AE1	B	538	553	Right-handed alpha
Helix 38	AE2	B	558	578	Right-handed alpha
Helix 39	AE3	B	606	627	Right-handed alpha
Helix 40	AE4	B	631	651	Right-handed alpha
Helix 41	AE5	B	672	681	Right-handed alpha
Helix 42	AE6	B	688	704	Right-handed alpha
Helix 43	AE7	B	707	711	Right-handed 310
Helix 44	AE8	B	730	734	Right-handed 310
Helix 45	AE9	B	737	750	Right-handed alpha
Helix 46	AF1	B	752	770	Right-handed alpha
Helix 47	AF2	B	792	795	Right-handed 310
Helix 48	AF3	B	796	805	Right-handed alpha

There are 18 sheets in PDB entry 9VMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	142	147	anti-parallel
Strand 4	A	154	160	anti-parallel
Strand 5	A	175	183	anti-parallel
Strand 6	A	333	343	anti-parallel
Strand 7	A	266	272	anti-parallel
Strand 8	A	246	253	anti-parallel
Strand 9	A	236	242	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	785	787	parallel
Strand 3	A	779	780	anti-parallel
Strand 4	A	735	736	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	72	74	anti-parallel
Strand 3	A	80	83	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	113	first strand
Strand 2	A	99	105	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	319	328	anti-parallel
Strand 5	A	277	284	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	222	223	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	354	356	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	423	first strand
Strand 2	A	435	436	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	487	first strand
Strand 2	A	501	505	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	668	first strand
Strand 2	A	717	718	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	134	139	anti-parallel
Strand 3	B	142	147	anti-parallel
Strand 4	B	154	160	anti-parallel
Strand 5	B	175	183	anti-parallel
Strand 6	B	333	343	anti-parallel
Strand 7	B	266	272	anti-parallel
Strand 8	B	246	253	anti-parallel
Strand 9	B	236	242	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	785	787	parallel
Strand 3	B	779	780	anti-parallel
Strand 4	B	735	736	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	72	74	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	91	92	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	113	first strand
Strand 2	B	99	105	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	319	328	anti-parallel
Strand 5	B	277	284	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	222	223	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	354	356	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	423	first strand
Strand 2	B	435	436	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	487	first strand
Strand 2	B	501	505	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	B	717	718	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMK