Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VMM entry

There are 4 chains in PDB entry 9VMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 555
B	MET 1	LEU 555
C	MET 1	LEU 555
D	MET 1	LEU 555

There are108 helices in PDB entry 9VMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	29	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	68	79	Right-handed alpha
Helix 4	AA4	A	90	103	Right-handed alpha
Helix 5	AA5	A	116	130	Right-handed alpha
Helix 6	AA6	A	153	155	Right-handed 310
Helix 7	AA7	A	156	170	Right-handed alpha
Helix 8	AA8	A	171	173	Right-handed 310
Helix 9	AA9	A	194	207	Right-handed alpha
Helix 10	AB1	A	223	235	Right-handed alpha
Helix 11	AB2	A	237	239	Right-handed 310
Helix 12	AB3	A	249	251	Right-handed 310
Helix 13	AB4	A	252	260	Right-handed alpha
Helix 14	AB5	A	261	270	Right-handed alpha
Helix 15	AB6	A	281	295	Right-handed alpha
Helix 16	AB7	A	311	313	Right-handed 310
Helix 17	AB8	A	314	329	Right-handed alpha
Helix 18	AB9	A	338	343	Right-handed alpha
Helix 19	AC1	A	344	349	Right-handed 310
Helix 20	AC2	A	350	363	Right-handed alpha
Helix 21	AC3	A	377	391	Right-handed alpha
Helix 22	AC4	A	399	413	Right-handed alpha
Helix 23	AC5	A	462	468	Right-handed alpha
Helix 24	AC6	A	485	493	Right-handed alpha
Helix 25	AC7	A	526	531	Right-handed 310
Helix 26	AC8	A	537	548	Right-handed alpha
Helix 27	AC9	A	550	555	Right-handed alpha
Helix 28	AD1	B	15	29	Right-handed alpha
Helix 29	AD2	B	46	50	Right-handed 310
Helix 30	AD3	B	68	79	Right-handed alpha
Helix 31	AD4	B	90	103	Right-handed alpha
Helix 32	AD5	B	116	130	Right-handed alpha
Helix 33	AD6	B	153	155	Right-handed 310
Helix 34	AD7	B	156	170	Right-handed alpha
Helix 35	AD8	B	171	173	Right-handed 310
Helix 36	AD9	B	194	207	Right-handed alpha
Helix 37	AE1	B	223	235	Right-handed alpha
Helix 38	AE2	B	237	239	Right-handed 310
Helix 39	AE3	B	249	251	Right-handed 310
Helix 40	AE4	B	252	260	Right-handed alpha
Helix 41	AE5	B	261	270	Right-handed alpha
Helix 42	AE6	B	281	295	Right-handed alpha
Helix 43	AE7	B	311	313	Right-handed 310
Helix 44	AE8	B	314	329	Right-handed alpha
Helix 45	AE9	B	338	343	Right-handed alpha
Helix 46	AF1	B	344	349	Right-handed 310
Helix 47	AF2	B	350	363	Right-handed alpha
Helix 48	AF3	B	377	391	Right-handed alpha
Helix 49	AF4	B	399	413	Right-handed alpha
Helix 50	AF5	B	462	468	Right-handed alpha
Helix 51	AF6	B	485	493	Right-handed alpha
Helix 52	AF7	B	526	531	Right-handed 310
Helix 53	AF8	B	537	548	Right-handed alpha
Helix 54	AF9	B	550	555	Right-handed alpha
Helix 55	AG1	C	15	29	Right-handed alpha
Helix 56	AG2	C	46	50	Right-handed 310
Helix 57	AG3	C	68	79	Right-handed alpha
Helix 58	AG4	C	90	103	Right-handed alpha
Helix 59	AG5	C	116	130	Right-handed alpha
Helix 60	AG6	C	153	155	Right-handed 310
Helix 61	AG7	C	156	170	Right-handed alpha
Helix 62	AG8	C	171	173	Right-handed 310
Helix 63	AG9	C	194	207	Right-handed alpha
Helix 64	AH1	C	223	235	Right-handed alpha
Helix 65	AH2	C	237	239	Right-handed 310
Helix 66	AH3	C	249	251	Right-handed 310
Helix 67	AH4	C	252	260	Right-handed alpha
Helix 68	AH5	C	261	270	Right-handed alpha
Helix 69	AH6	C	281	295	Right-handed alpha
Helix 70	AH7	C	311	313	Right-handed 310
Helix 71	AH8	C	314	329	Right-handed alpha
Helix 72	AH9	C	338	343	Right-handed alpha
Helix 73	AI1	C	344	349	Right-handed 310
Helix 74	AI2	C	350	363	Right-handed alpha
Helix 75	AI3	C	377	391	Right-handed alpha
Helix 76	AI4	C	399	413	Right-handed alpha
Helix 77	AI5	C	462	468	Right-handed alpha
Helix 78	AI6	C	485	493	Right-handed alpha
Helix 79	AI7	C	526	531	Right-handed 310
Helix 80	AI8	C	537	548	Right-handed alpha
Helix 81	AI9	C	550	555	Right-handed alpha
Helix 82	AJ1	D	15	29	Right-handed alpha
Helix 83	AJ2	D	46	50	Right-handed 310
Helix 84	AJ3	D	68	79	Right-handed alpha
Helix 85	AJ4	D	90	103	Right-handed alpha
Helix 86	AJ5	D	116	130	Right-handed alpha
Helix 87	AJ6	D	153	155	Right-handed 310
Helix 88	AJ7	D	156	170	Right-handed alpha
Helix 89	AJ8	D	171	173	Right-handed 310
Helix 90	AJ9	D	194	207	Right-handed alpha
Helix 91	AK1	D	223	235	Right-handed alpha
Helix 92	AK2	D	237	239	Right-handed 310
Helix 93	AK3	D	249	251	Right-handed 310
Helix 94	AK4	D	252	260	Right-handed alpha
Helix 95	AK5	D	261	270	Right-handed alpha
Helix 96	AK6	D	281	295	Right-handed alpha
Helix 97	AK7	D	311	313	Right-handed 310
Helix 98	AK8	D	314	329	Right-handed alpha
Helix 99	AK9	D	338	343	Right-handed alpha
Helix 100	AL1	D	344	349	Right-handed 310
Helix 101	AL2	D	350	363	Right-handed alpha
Helix 102	AL3	D	377	391	Right-handed alpha
Helix 103	AL4	D	399	413	Right-handed alpha
Helix 104	AL5	D	462	468	Right-handed alpha
Helix 105	AL6	D	485	493	Right-handed alpha
Helix 106	AL7	D	526	531	Right-handed 310
Helix 107	AL8	D	537	548	Right-handed alpha
Helix 108	AL9	D	550	555	Right-handed alpha

There are 16 sheets in PDB entry 9VMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	34	40	parallel
Strand 3	A	142	147	parallel
Strand 4	A	2	8	parallel
Strand 5	A	175	182	parallel
Strand 6	A	213	217	parallel
Strand 7	A	241	244	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	66	67	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	337	first strand
Strand 2	A	298	304	parallel
Strand 3	A	367	369	parallel
Strand 4	A	395	398	parallel
Strand 5	A	520	523	parallel
Strand 6	A	509	514	anti-parallel
Strand 7	A	497	502	anti-parallel
Strand 8	A	449	457	anti-parallel
Strand 9	A	473	480	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	482	484	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	34	40	parallel
Strand 3	B	142	147	parallel
Strand 4	B	2	8	parallel
Strand 5	B	175	182	parallel
Strand 6	B	213	217	parallel
Strand 7	B	241	244	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	66	67	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	337	first strand
Strand 2	B	298	304	parallel
Strand 3	B	367	369	parallel
Strand 4	B	395	398	parallel
Strand 5	B	520	523	parallel
Strand 6	B	509	514	anti-parallel
Strand 7	B	497	502	anti-parallel
Strand 8	B	449	457	anti-parallel
Strand 9	B	473	480	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	482	484	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	34	40	parallel
Strand 3	C	142	147	parallel
Strand 4	C	2	8	parallel
Strand 5	C	175	182	parallel
Strand 6	C	213	217	parallel
Strand 7	C	241	244	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	67	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	337	first strand
Strand 2	C	298	304	parallel
Strand 3	C	367	369	parallel
Strand 4	C	395	398	parallel
Strand 5	C	520	523	parallel
Strand 6	C	509	514	anti-parallel
Strand 7	C	497	502	anti-parallel
Strand 8	C	449	457	anti-parallel
Strand 9	C	473	480	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	435	first strand
Strand 2	C	482	484	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	34	40	parallel
Strand 3	D	142	147	parallel
Strand 4	D	2	8	parallel
Strand 5	D	175	182	parallel
Strand 6	D	213	217	parallel
Strand 7	D	241	244	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	66	67	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	337	first strand
Strand 2	D	298	304	parallel
Strand 3	D	367	369	parallel
Strand 4	D	395	398	parallel
Strand 5	D	520	523	parallel
Strand 6	D	509	514	anti-parallel
Strand 7	D	497	502	anti-parallel
Strand 8	D	449	457	anti-parallel
Strand 9	D	473	480	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	433	435	first strand
Strand 2	D	482	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMM