Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VMQ entry

There are 4 chains in PDB entry 9VMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 64SER 285
B
 THR 65VAL 284
C
 SER 64VAL 284
D
 SER 64VAL 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9VMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 80Right-handed alpha
Helix 2
AA2
A
86 104Right-handed alpha
Helix 3
AA3
A
115 117Right-handed 310
Helix 4
AA4
A
118 135Right-handed alpha
Helix 5
AA5
A
139 155Right-handed alpha
Helix 6
AA6
A
158 174Right-handed alpha
Helix 7
AA7
A
218 226Right-handed alpha
Helix 8
AA8
A
227 230Right-handed 310
Helix 9
AA9
A
258 264Right-handed alpha
Helix 10
AB1
A
264 275Right-handed alpha
Helix 11
AB2
A
276 279Right-handed 310
Helix 12
AB3
B
66 80Right-handed alpha
Helix 13
AB4
B
86 104Right-handed alpha
Helix 14
AB5
B
115 117Right-handed 310
Helix 15
AB6
B
118 135Right-handed alpha
Helix 16
AB7
B
139 155Right-handed alpha
Helix 17
AB8
B
158 174Right-handed alpha
Helix 18
AB9
B
218 226Right-handed alpha
Helix 19
AC1
B
227 230Right-handed 310
Helix 20
AC2
B
249 253Right-handed 310
Helix 21
AC3
B
258 264Right-handed alpha
Helix 22
AC4
B
264 275Right-handed alpha
Helix 23
AC5
B
276 279Right-handed 310
Helix 24
AC6
C
65 80Right-handed alpha
Helix 25
AC7
C
86 104Right-handed alpha
Helix 26
AC8
C
115 117Right-handed 310
Helix 27
AC9
C
118 135Right-handed alpha
Helix 28
AD1
C
139 155Right-handed alpha
Helix 29
AD2
C
158 174Right-handed alpha
Helix 30
AD3
C
218 226Right-handed alpha
Helix 31
AD4
C
227 230Right-handed 310
Helix 32
AD5
C
258 264Right-handed alpha
Helix 33
AD6
C
264 275Right-handed alpha
Helix 34
AD7
C
276 279Right-handed 310
Helix 35
AD8
D
65 80Right-handed alpha
Helix 36
AD9
D
86 104Right-handed alpha
Helix 37
AE1
D
115 117Right-handed 310
Helix 38
AE2
D
118 135Right-handed alpha
Helix 39
AE3
D
139 155Right-handed alpha
Helix 40
AE4
D
158 174Right-handed alpha
Helix 41
AE5
D
218 226Right-handed alpha
Helix 42
AE6
D
227 230Right-handed 310
Helix 43
AE7
D
258 264Right-handed alpha
Helix 44
AE8
D
264 275Right-handed alpha
Helix 45
AE9
D
276 279Right-handed 310
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There are 4 sheets in PDB entry 9VMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
184 189anti-parallel
Strand 5
A
233 238anti-parallel
Strand 6
A
244 248anti-parallel
Strand 7
A
254 257anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 212first strand
Strand 2
B
201 204anti-parallel
Strand 3
B
192 197anti-parallel
Strand 4
B
184 189anti-parallel
Strand 5
B
233 238anti-parallel
Strand 6
B
244 248anti-parallel
Strand 7
B
254 257anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 212first strand
Strand 2
C
201 204anti-parallel
Strand 3
C
192 197anti-parallel
Strand 4
C
184 189anti-parallel
Strand 5
C
233 238anti-parallel
Strand 6
C
244 248anti-parallel
Strand 7
C
254 257anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 212first strand
Strand 2
D
201 204anti-parallel
Strand 3
D
192 197anti-parallel
Strand 4
D
184 189anti-parallel
Strand 5
D
233 238anti-parallel
Strand 6
D
244 248anti-parallel
Strand 7
D
254 257anti-parallel
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