Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VMV entry

There is 1 chain in PDB entry 9VMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4SER 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 9VMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
160 164Right-handed 310
Helix 2
AA2
A
192 194Right-handed 310
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There are 3 sheets in PDB entry 9VMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
229 239anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
49 51anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
69 71parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
229 239anti-parallel
Strand 5
A
85 92anti-parallel
Strand 6
A
166 173anti-parallel
Strand 7
A
176 181anti-parallel
Strand 8
A
184 190anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
205 213anti-parallel
Strand 4
A
99 107anti-parallel
Strand 5
A
120 125anti-parallel
Strand 6
A
133 140anti-parallel
Strand 7
A
143 154anti-parallel
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