Analysis of interatomic Contacts of Structural Units in PDB entry:
9VMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VMW entry

There is 1 chain in PDB entry 9VMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4THR 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9VMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 24Right-handed alpha
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
84 100Right-handed alpha
Helix 5
AA5
A
117 133Right-handed alpha
Helix 6
AA6
A
136 138Right-handed 310
Helix 7
AA7
A
146 162Right-handed alpha
Helix 8
AA8
A
184 189Right-handed alpha
Helix 9
AA9
A
197 210Right-handed alpha
Helix 10
AB1
A
220 224Right-handed 310
Helix 11
AB2
A
242 256Right-handed alpha
Helix 12
AB3
A
271 276Right-handed 310
Helix 13
AB4
A
279 297Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9VMW.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 53first strand
Strand 2
A
56 62anti-parallel
Strand 3
A
101 106anti-parallel
Strand 4
A
67 75parallel
Strand 5
A
140 145parallel
Strand 6
A
169 173parallel
Strand 7
A
232 237parallel
Strand 8
A
260 265parallel
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