Analysis of interatomic Contacts of Structural Units in PDB entry:
9VN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VN8 entry

There is 1 chain in PDB entry 9VN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12ALA 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9VN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
32 37Right-handed alpha
Helix 3
AA3
A
56 70Right-handed alpha
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
120 133Right-handed alpha
Helix 6
AA6
A
145 153Right-handed alpha
Helix 7
AA7
A
158 163Right-handed alpha
Helix 8
AA8
A
164 167Right-handed 310
Helix 9
AA9
A
189 197Right-handed alpha
Helix 10
AB1
A
228 232Right-handed 310
Helix 11
AB2
A
233 250Right-handed alpha
Helix 12
AB3
A
277 287Right-handed alpha
Helix 13
AB4
A
288 293Right-handed alpha
Helix 14
AB5
A
307 314Right-handed alpha
Helix 15
AB6
A
344 357Right-handed alpha
Helix 16
AB7
A
358 361Right-handed 310
Helix 17
AB8
A
379 384Right-handed alpha
Helix 18
AB9
A
385 389Right-handed 310
Helix 19
AC1
A
412 429Right-handed alpha
Helix 20
AC2
A
439 443Right-handed 310
Helix 21
AC3
A
448 458Right-handed alpha
Helix 22
AC4
A
460 472Right-handed alpha
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There are 4 sheets in PDB entry 9VN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
95 98parallel
Strand 4
A
74 77parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
205 212anti-parallel
Strand 4
A
169 175anti-parallel
Strand 5
A
181 184anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
214 215anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 306first strand
Strand 2
A
220 227anti-parallel
Strand 3
A
268 274anti-parallel
Strand 4
A
257 263anti-parallel
Strand 5
A
368 373anti-parallel
Strand 6
A
398 405anti-parallel
Strand 7
A
333 340anti-parallel
Strand 8
A
436 437anti-parallel
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