Analysis of interatomic Contacts of Structural Units in PDB entry:
9VN9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VN9 entry

There are 4 chains in PDB entry 9VN9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 104	LYS 1104
B	GLY 104	LYS 1104
C	GLY 104	LYS 1104
D	GLY 104	LYS 1104

There are160 helices in PDB entry 9VN9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	136	Right-handed alpha
Helix 2	AA2	A	158	176	Right-handed alpha
Helix 3	AA3	A	186	202	Right-handed alpha
Helix 4	AA4	A	275	288	Right-handed alpha
Helix 5	AA5	A	309	322	Right-handed alpha
Helix 6	AA6	A	335	343	Right-handed alpha
Helix 7	AA7	A	351	362	Right-handed alpha
Helix 8	AA8	A	362	369	Right-handed alpha
Helix 9	AA9	A	370	387	Right-handed alpha
Helix 10	AB1	A	403	419	Right-handed alpha
Helix 11	AB2	A	425	437	Right-handed alpha
Helix 12	AB3	A	438	446	Right-handed alpha
Helix 13	AB4	A	454	468	Right-handed alpha
Helix 14	AB5	A	470	480	Right-handed alpha
Helix 15	AB6	A	483	488	Right-handed alpha
Helix 16	AB7	A	489	498	Right-handed alpha
Helix 17	AB8	A	507	516	Right-handed alpha
Helix 18	AB9	A	518	532	Right-handed alpha
Helix 19	AC1	A	559	571	Right-handed alpha
Helix 20	AC2	A	574	584	Right-handed alpha
Helix 21	AC3	A	586	603	Right-handed alpha
Helix 22	AC4	A	607	636	Right-handed alpha
Helix 23	AC5	A	637	646	Right-handed alpha
Helix 24	AC6	A	655	663	Right-handed alpha
Helix 25	AC7	A	665	670	Right-handed alpha
Helix 26	AC8	A	671	684	Right-handed alpha
Helix 27	AC9	A	691	701	Right-handed alpha
Helix 28	AD1	A	733	757	Right-handed alpha
Helix 29	AD2	A	765	788	Right-handed alpha
Helix 30	AD3	A	789	796	Right-handed alpha
Helix 31	AD4	A	796	818	Right-handed alpha
Helix 32	AD5	A	821	844	Right-handed alpha
Helix 33	AD6	A	845	850	Right-handed 310
Helix 34	AD7	A	853	867	Right-handed alpha
Helix 35	AD8	A	867	889	Right-handed alpha
Helix 36	AD9	A	897	912	Right-handed alpha
Helix 37	AE1	A	956	988	Right-handed alpha
Helix 38	AE2	A	990	1008	Right-handed alpha
Helix 39	AE3	A	1048	1072	Right-handed alpha
Helix 40	AE4	A	1075	1104	Right-handed alpha
Helix 41	AE5	B	125	136	Right-handed alpha
Helix 42	AE6	B	158	176	Right-handed alpha
Helix 43	AE7	B	186	202	Right-handed alpha
Helix 44	AE8	B	275	288	Right-handed alpha
Helix 45	AE9	B	309	322	Right-handed alpha
Helix 46	AF1	B	335	343	Right-handed alpha
Helix 47	AF2	B	351	362	Right-handed alpha
Helix 48	AF3	B	362	369	Right-handed alpha
Helix 49	AF4	B	370	387	Right-handed alpha
Helix 50	AF5	B	403	419	Right-handed alpha
Helix 51	AF6	B	425	437	Right-handed alpha
Helix 52	AF7	B	438	446	Right-handed alpha
Helix 53	AF8	B	454	468	Right-handed alpha
Helix 54	AF9	B	470	480	Right-handed alpha
Helix 55	AG1	B	483	488	Right-handed alpha
Helix 56	AG2	B	489	498	Right-handed alpha
Helix 57	AG3	B	507	516	Right-handed alpha
Helix 58	AG4	B	520	532	Right-handed alpha
Helix 59	AG5	B	559	571	Right-handed alpha
Helix 60	AG6	B	574	584	Right-handed alpha
Helix 61	AG7	B	586	603	Right-handed alpha
Helix 62	AG8	B	607	636	Right-handed alpha
Helix 63	AG9	B	637	646	Right-handed alpha
Helix 64	AH1	B	655	663	Right-handed alpha
Helix 65	AH2	B	665	670	Right-handed alpha
Helix 66	AH3	B	671	684	Right-handed alpha
Helix 67	AH4	B	691	701	Right-handed alpha
Helix 68	AH5	B	733	757	Right-handed alpha
Helix 69	AH6	B	765	788	Right-handed alpha
Helix 70	AH7	B	789	796	Right-handed alpha
Helix 71	AH8	B	796	818	Right-handed alpha
Helix 72	AH9	B	821	844	Right-handed alpha
Helix 73	AI1	B	845	850	Right-handed 310
Helix 74	AI2	B	853	867	Right-handed alpha
Helix 75	AI3	B	867	889	Right-handed alpha
Helix 76	AI4	B	897	912	Right-handed alpha
Helix 77	AI5	B	956	988	Right-handed alpha
Helix 78	AI6	B	990	1008	Right-handed alpha
Helix 79	AI7	B	1048	1072	Right-handed alpha
Helix 80	AI8	B	1075	1104	Right-handed alpha
Helix 81	AI9	C	125	136	Right-handed alpha
Helix 82	AJ1	C	158	176	Right-handed alpha
Helix 83	AJ2	C	186	202	Right-handed alpha
Helix 84	AJ3	C	275	288	Right-handed alpha
Helix 85	AJ4	C	309	322	Right-handed alpha
Helix 86	AJ5	C	335	343	Right-handed alpha
Helix 87	AJ6	C	351	362	Right-handed alpha
Helix 88	AJ7	C	362	369	Right-handed alpha
Helix 89	AJ8	C	370	387	Right-handed alpha
Helix 90	AJ9	C	403	419	Right-handed alpha
Helix 91	AK1	C	425	437	Right-handed alpha
Helix 92	AK2	C	438	446	Right-handed alpha
Helix 93	AK3	C	454	468	Right-handed alpha
Helix 94	AK4	C	470	480	Right-handed alpha
Helix 95	AK5	C	483	488	Right-handed alpha
Helix 96	AK6	C	489	498	Right-handed alpha
Helix 97	AK7	C	507	516	Right-handed alpha
Helix 98	AK8	C	520	532	Right-handed alpha
Helix 99	AK9	C	559	571	Right-handed alpha
Helix 100	AL1	C	574	584	Right-handed alpha
Helix 101	AL2	C	586	603	Right-handed alpha
Helix 102	AL3	C	607	636	Right-handed alpha
Helix 103	AL4	C	637	646	Right-handed alpha
Helix 104	AL5	C	655	663	Right-handed alpha
Helix 105	AL6	C	665	670	Right-handed alpha
Helix 106	AL7	C	671	684	Right-handed alpha
Helix 107	AL8	C	691	701	Right-handed alpha
Helix 108	AL9	C	733	757	Right-handed alpha
Helix 109	AM1	C	765	788	Right-handed alpha
Helix 110	AM2	C	789	796	Right-handed alpha
Helix 111	AM3	C	796	818	Right-handed alpha
Helix 112	AM4	C	821	844	Right-handed alpha
Helix 113	AM5	C	845	850	Right-handed 310
Helix 114	AM6	C	853	867	Right-handed alpha
Helix 115	AM7	C	867	889	Right-handed alpha
Helix 116	AM8	C	897	912	Right-handed alpha
Helix 117	AM9	C	956	988	Right-handed alpha
Helix 118	AN1	C	990	1008	Right-handed alpha
Helix 119	AN2	C	1048	1072	Right-handed alpha
Helix 120	AN3	C	1075	1104	Right-handed alpha
Helix 121	AN4	D	125	136	Right-handed alpha
Helix 122	AN5	D	158	176	Right-handed alpha
Helix 123	AN6	D	186	202	Right-handed alpha
Helix 124	AN7	D	275	288	Right-handed alpha
Helix 125	AN8	D	309	322	Right-handed alpha
Helix 126	AN9	D	335	343	Right-handed alpha
Helix 127	AO1	D	351	362	Right-handed alpha
Helix 128	AO2	D	362	369	Right-handed alpha
Helix 129	AO3	D	370	387	Right-handed alpha
Helix 130	AO4	D	403	419	Right-handed alpha
Helix 131	AO5	D	425	437	Right-handed alpha
Helix 132	AO6	D	438	446	Right-handed alpha
Helix 133	AO7	D	454	468	Right-handed alpha
Helix 134	AO8	D	470	480	Right-handed alpha
Helix 135	AO9	D	483	488	Right-handed alpha
Helix 136	AP1	D	489	498	Right-handed alpha
Helix 137	AP2	D	507	516	Right-handed alpha
Helix 138	AP3	D	518	532	Right-handed alpha
Helix 139	AP4	D	559	571	Right-handed alpha
Helix 140	AP5	D	574	584	Right-handed alpha
Helix 141	AP6	D	586	603	Right-handed alpha
Helix 142	AP7	D	607	636	Right-handed alpha
Helix 143	AP8	D	637	646	Right-handed alpha
Helix 144	AP9	D	655	663	Right-handed alpha
Helix 145	AQ1	D	665	670	Right-handed alpha
Helix 146	AQ2	D	671	684	Right-handed alpha
Helix 147	AQ3	D	691	701	Right-handed alpha
Helix 148	AQ4	D	733	757	Right-handed alpha
Helix 149	AQ5	D	765	788	Right-handed alpha
Helix 150	AQ6	D	789	796	Right-handed alpha
Helix 151	AQ7	D	796	818	Right-handed alpha
Helix 152	AQ8	D	821	844	Right-handed alpha
Helix 153	AQ9	D	845	850	Right-handed 310
Helix 154	AR1	D	853	867	Right-handed alpha
Helix 155	AR2	D	867	889	Right-handed alpha
Helix 156	AR3	D	897	912	Right-handed alpha
Helix 157	AR4	D	956	988	Right-handed alpha
Helix 158	AR5	D	990	1008	Right-handed alpha
Helix 159	AR6	D	1048	1072	Right-handed alpha
Helix 160	AR7	D	1075	1104	Right-handed alpha

There are 8 sheets in PDB entry 9VN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	260	262	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	178	181	parallel
Strand 3	A	144	146	parallel
Strand 4	A	301	303	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	260	262	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	178	181	parallel
Strand 3	B	144	146	parallel
Strand 4	B	301	303	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	260	261	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	C	178	181	parallel
Strand 3	C	144	146	parallel
Strand 4	C	301	303	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	260	262	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	213	first strand
Strand 2	D	178	181	parallel
Strand 3	D	144	146	parallel
Strand 4	D	301	303	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VN9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VN9